PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00002.15

Common Name

AMTR_s00002p00041060

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bHLH

Protein Properties

Length: 253aa MW: 27911.8 Da PI: 7.5355

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.15	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.5	2.1e-17	48	101	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++hn++Er RR+r+N+af++Lr llP + + +++K s +++ kAv+YI +Lq evm_27.model.AmTr_v1.0_scaffold00002.15 48 KKQSHNANERERRKRLNTAFSNLRFLLPDS-SISKRKWSIPTTVSKAVDYIPELQ 101 799************************6.468888*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-16	47	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.23E-14	47	104	No hit	No description
PROSITE profile	PS50888	14.977	47	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-14	48	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-14	48	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-12	53	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MVALPSDWAL KIGCEDDGFL RAREDTLCGP LDYDNGWQGG VIGVDLNKKQ SHNANERERR 60 KRLNTAFSNL RFLLPDSSIS KRKWSIPTTV SKAVDYIPEL QREVDDLLKR REKLHASVST 120 HHERTHPLTS CLPTVTVIRV DQLEITTQIC LSKAYSLPFS TLVARLEGEG LHVTSGSTSA 180 ICGNRVCYNL HLQVLLATKF GSLFFSPNQH REPAMAEVLI WLGRSADLGP GSRPIFGASE 240 SLQESGLDMG LG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006838370.3	1e-143	transcription factor bHLH100 isoform X1
TrEMBL	W1NZY2	0.0	W1NZY2_AMBTC; Uncharacterized protein
STRING	ERN00939	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2826	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00002.15

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]