PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.72
Common NameAMTR_s00001p00105570
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 344aa    MW: 39146.9 Da    PI: 5.6359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.72genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-161461148
                                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             rg W++eEde+lv++++  G g+W+ ++++ g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00001.72 14 RGLWSPEEDEKLVRYITSNGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                                             788*******************************************97 PP
2Myb_DNA-binding54.72.4e-1767111147
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                              rgr+T eE+++++++++  G++ W+ Ia++++ gRt++++k++w+++
  evm_27.model.AmTr_v1.0_scaffold00001.72  67 RGRFTSEEEKIIINLHAVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                                              89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-24664IPR009057Homeodomain-like
PROSITE profilePS5129416.852961IPR017930Myb domain
SuperFamilySSF466897.7E-2911108IPR009057Homeodomain-like
SMARTSM007177.7E-111363IPR001005SANT/Myb domain
PfamPF002494.8E-141461IPR001005SANT/Myb domain
CDDcd001672.04E-91761No hitNo description
PROSITE profilePS5129425.4262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2565116IPR009057Homeodomain-like
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002491.9E-1567111IPR001005SANT/Myb domain
CDDcd001671.89E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLVRYIT SNGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TSEEEKIIIN LHAVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKSA  120
SPSKTPSSTI DNLQPTYVDN FHHTSVMEQL EYPKQEPSSK PVFAKEFSSV SPPFLPLTGP  180
IEGIRDEIDH EISGLNLEPW QPNCDLHVPS SFGFTSVIDS SYLGNSVERW EEMERENLGN  240
MRENMESMRE NMMRENLESI RENMMRENGG FMGVQVQECN GVEGDERVGR ECMESGWVEA  300
QQYHQGLMLW DQLTTGLGGY AALGPQLSGN VDALAGSYQS PFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532215.10.0transcription factor MYB3
TrEMBLW1NLV10.0W1NLV1_AMBTC; Uncharacterized protein
STRINGERM961950.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.13e-79myb domain protein 103
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]