PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB

Protein Properties

Length: 341aa MW: 38417.2 Da PI: 6.999

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.525	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.8	6.6e-15	29	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+ eEd+ lv++v ++G + W+ Ia ++ gR +kqc++rw+++l evm_27.model.AmTr_v1.0_scaffold00001.525 29 KGQWSSEEDKMLVRLVDEFGEKKWSQIACRLV-GRVGKQCRERWHNHL 75 799***************************.***********97 PP
2	Myb_DNA-binding	55.5	1.3e-17	81	123	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ lv+a++ G++ W+ Ia++++ gRt++++k++w+ evm_27.model.AmTr_v1.0_scaffold00001.525 81 KDAWSEEEERTLVEAHADVGNR-WAEIAKCLP-GRTENSIKNHWN 123 689*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.244	24	75	IPR017930	Myb domain
SMART	SM00717	1.1E-12	28	77	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.47E-29	28	122	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-26	30	82	IPR009057	Homeodomain-like
CDD	cd00167	4.26E-11	32	75	No hit	No description
Pfam	PF13921	3.8E-17	32	92	No hit	No description
PROSITE profile	PS51294	25.733	76	130	IPR017930	Myb domain
SMART	SM00717	2.8E-17	80	128	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-22	83	130	IPR009057	Homeodomain-like
CDD	cd00167	4.77E-12	83	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1904095	Biological Process	negative regulation of endosperm development
GO:2000692	Biological Process	negative regulation of seed maturation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MRRFEEEMSS SIAQTLLPTT TTLKTLLIKG QWSSEEDKML VRLVDEFGEK KWSQIACRLV 60 GRVGKQCRER WHNHLRPDIK KDAWSEEEER TLVEAHADVG NRWAEIAKCL PGRTENSIKN 120 HWNATKRRQL STKRSRNSNN NNNHHHGNTT TTSTQRPSTS SVLQEYIKTQ TLPTTTTTTR 180 NLMVGLPPPL KEIPEQLPKM LQAEPLACAG FPIAPNPMAG MENGCSSGSG SSSSSSCGGY 240 SVCDRESCCD MDLFSLLECH ACAGGGSFRG GRNYCYGLEE KQQKEGHDWF PEPKMEIEIK 300 EEEEKVRREA DLFELVAGTV HPECSRWTGN KWVMEPSCFY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	5e-45	26	130	1	105	C-Myb DNA-Binding Domain
1msf_C	5e-45	26	130	1	105	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006829232.3	0.0	transcription factor MYB3R-3
TrEMBL	W1NM96	0.0	W1NM96_AMBTC; Uncharacterized protein
STRING	ERM96648	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	1e-52	myb domain protein 119

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00001.525

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]