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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00001.504 |
| Common Name | AMTR_s00001p00272070, LOC18424562 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
bHLH |
| Protein Properties |
Length: 390aa MW: 43205.8 Da PI: 7.08 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00001.504 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 39.6 | 9.6e-13 | 187 | 238 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P + ++ + a+i A++++k+L+
evm_27.model.AmTr_v1.0_scaffold00001.504 187 QRMTHIAVERNRRKQMNEHLNALRSLMPAS---FIQRGDQASIIGGAIDFVKELE 238
79***************************9...9******************995 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MQGPIDPCCL QAFVEHQTLE CLDQGNGVDL GAPAWAPTLG AEGLRLGDNW FTSFCSLSPQ 60
KSAMPNLSFL NILEPARASG LCPYFMDSSH IQALELESCI THVSETYSPE KPGAKDIRKL 120
EEAASSVNRE PNSPENGRDH NSGSSSGWVR ELRAQPEAKH LSTGAVRERK KRKRSKACKN 180
SREVESQRMT HIAVERNRRK QMNEHLNALR SLMPASFIQR GDQASIIGGA IDFVKELEQL 240
LQSLQAKKQT RQSEEGYSPT SSTVPFNGFF SSPQYTTYSN FKYMVDGLMD QRGNEFKAEN 300
KSAVADIEVT LIQTHANLKI LSPRRPGQLL KTIAALENLE LTILHLNITT IQHSVLYSFN 360
LKIEEGCKLG SADEIAAAVH QIFSFINEN*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 168 | 173 | RKKRKR |
| 2 | 169 | 174 | KKRKRS |
| 3 | 187 | 198 | RMTHIAVERNRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator (PubMed:17088607, PubMed:17183265, PubMed:17183267). Together with MYB88 and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata (PubMed:17088607, PubMed:17183265, PubMed:17183267). Prevents histone H3K27me3 marks and derepresses stem cell gene expression (PubMed:24654956). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Inhibited by low relative humidity (LRH) via epigenetic CG methylation, thus leading to a reduced stomatal index. {ECO:0000269|PubMed:22442411}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Matos JL, et al.
Irreversible fate commitment in the Arabidopsis stomatal lineage requires a FAMA and RETINOBLASTOMA-RELATED module.
Elife, 2015.
[PMID:25303364] - Chen L, et al.
NRPB3, the third largest subunit of RNA polymerase II, is essential for stomatal patterning and differentiation in Arabidopsis.
Development, 2016. 143(9): p. 1600-11
[PMID:26989174] - Lee JH,Jung JH,Park CM
Light Inhibits COP1-Mediated Degradation of ICE Transcription Factors to Induce Stomatal Development in Arabidopsis.
Plant Cell, 2017. 29(11): p. 2817-2830
[PMID:29070509] - Han X, et al.
Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons.
Plant Physiol., 2018. 176(4): p. 2871-2885
[PMID:29496884] - Li X,Yang R,Chen H
The Arabidopsis thaliana Mediator subunit MED8 regulates plant immunity to Botrytis Cinerea through interacting with the basic helix-loop-helix (bHLH) transcription factor FAMA.
PLoS ONE, 2018. 13(3): p. e0193458
[PMID:29513733]
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