PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

TALE

Protein Properties

Length: 280aa MW: 32110.4 Da PI: 7.1205

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.399	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.8	1.5e-07	228	261	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + evm_27.model.AmTr_v1.0_scaffold00001.399 228 KWPYPTEDDKTRLVDETGLQLKQINNWFINQRKR 261 469*****************************87 PP
2	ELK	26.4	1.5e-09	182	203	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ evm_27.model.AmTr_v1.0_scaffold00001.399 182 ELKIELKQGFRSRIEDVREEIL 203 9*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	8.8E-19	13	57	IPR005540	KNOX1
Pfam	PF03790	3.2E-17	15	56	IPR005540	KNOX1
SMART	SM01256	3.9E-22	72	127	IPR005541	KNOX2
Pfam	PF03791	1.1E-18	75	126	IPR005541	KNOX2
PROSITE profile	PS51213	9.184	182	202	IPR005539	ELK domain
PROSITE profile	PS50071	11.661	202	265	IPR001356	Homeobox domain
SMART	SM00389	1.1E-10	204	269	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-16	204	268	IPR009057	Homeodomain-like
CDD	cd00086	8.83E-11	205	266	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.0E-25	209	267	IPR009057	Homeodomain-like
Pfam	PF05920	8.0E-18	222	261	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MVGEGVAEEE ERERVKAEIA GHPLYEQLLA AHVGCLRVAT PIDQLPLIDA QLARSHNLLR 60 AYSAIRLRNP NPILHPHDRQ HLDQFLAQYV LVLSSFKEQL QQHVRIHAVE AVTACREIEQ 120 SLHALTGATL GEGTGATMSD DEDDLQMDFA MDAGAEAQDM MRFGPLLPTE SERSLMERVR 180 QELKIELKQG FRSRIEDVRE EILRKRRAGK LPGDTTSVLK QWWQQHSKWP YPTEDDKTRL 240 VDETGLQLKQ INNWFINQRK RNWHSNSQSV TCLKSKRKR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	278	RKRNWHSNSQSVTCLKSKRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Possible developmental regulator.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding; up to 7-fold increase.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006829106.1	0.0	homeobox protein HD1 isoform X2
Swissprot	P46606	1e-152	HD1_BRANA; Homeobox protein HD1
TrEMBL	W1NL03	0.0	W1NL03_AMBTC; Uncharacterized protein
STRING	ERM96522	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-138	KNOTTED-like homeobox of Arabidopsis thaliana 7

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00001.399
Entrez Gene	18424456

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Boivin R,Hamel F,Beauseigle D,Bellemare G Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus. Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4 [PMID:7916213]