PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00001.382 | ||||||||
Common Name | AMTR_s00001p00261720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bZIP | ||||||||
Protein Properties | Length: 419aa MW: 47230.7 Da PI: 7.7129 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.9 | 4.5e-08 | 274 | 313 | 17 | 56 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 A+rsR RK+++i+eLe+ v +L+ae +++ e++ l+++ evm_27.model.AmTr_v1.0_scaffold00001.382 274 AQRSRVRKLQYIAELERNVSTLQAEESEMSAEISFLNQQL 313 89*******************************9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.2E-5 | 263 | 322 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.88E-15 | 264 | 312 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.2E-6 | 274 | 314 | No hit | No description |
SuperFamily | SSF57959 | 4.98E-6 | 274 | 316 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MHHYDGVSQV MSKVPFSPVS NDSGVAQMGN WSHSGKQLNL PPRIPFPSMA PAYSNCGSSP 60 LTGKPCVPIS RKECRQHQRT SSESFLIEEQ PSWLDDLLNE PETPIGKGAH RRSSSDSIAY 120 MDYPGTFSKG VTASQEDLNS SNIQSFPFQG FLDYDNFKDE TLSSFCSERN SLKAPYLRGW 180 EPLMNSCRMS SCRDNKKLES LGKPFESARV TMAETQGERE SGECDSRFTE SKESSYVNSV 240 ASEKTQNESF ERRADSHLRP ASEADPKRAK QHFAQRSRVR KLQYIAELER NVSTLQAEES 300 EMSAEISFLN QQLIILSLEN KALKQRLNSV AHEKRLKDAQ YELLTKEVER LRGMYRKQQQ 360 MKSQHQCGRP GTYLEVQLSN LSLNSLLTHS EKCPEKEPNG ATTSNTRSSY SCMMLQNS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020532209.1 | 0.0 | uncharacterized protein At4g06598 isoform X1 | ||||
Refseq | XP_020532210.1 | 0.0 | uncharacterized protein At4g06598 isoform X1 | ||||
TrEMBL | W1NMK8 | 0.0 | W1NMK8_AMBTC; Uncharacterized protein | ||||
STRING | ERM96505 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4252 | 12 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58110.2 | 2e-62 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00001.382 |
Publications ? help Back to Top | |||
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