PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.382
Common NameAMTR_s00001p00261720
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 419aa    MW: 47230.7 Da    PI: 7.7129
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.382genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.94.5e-082743131756
                                               HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                                               A+rsR RK+++i+eLe+ v +L+ae +++  e++ l+++ 
  evm_27.model.AmTr_v1.0_scaffold00001.382 274 AQRSRVRKLQYIAELERNVSTLQAEESEMSAEISFLNQQL 313
                                               89*******************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-5263322IPR004827Basic-leucine zipper domain
CDDcd147032.88E-15264312No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-6274314No hitNo description
SuperFamilySSF579594.98E-6274316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MHHYDGVSQV MSKVPFSPVS NDSGVAQMGN WSHSGKQLNL PPRIPFPSMA PAYSNCGSSP  60
LTGKPCVPIS RKECRQHQRT SSESFLIEEQ PSWLDDLLNE PETPIGKGAH RRSSSDSIAY  120
MDYPGTFSKG VTASQEDLNS SNIQSFPFQG FLDYDNFKDE TLSSFCSERN SLKAPYLRGW  180
EPLMNSCRMS SCRDNKKLES LGKPFESARV TMAETQGERE SGECDSRFTE SKESSYVNSV  240
ASEKTQNESF ERRADSHLRP ASEADPKRAK QHFAQRSRVR KLQYIAELER NVSTLQAEES  300
EMSAEISFLN QQLIILSLEN KALKQRLNSV AHEKRLKDAQ YELLTKEVER LRGMYRKQQQ  360
MKSQHQCGRP GTYLEVQLSN LSLNSLLTHS EKCPEKEPNG ATTSNTRSSY SCMMLQNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532209.10.0uncharacterized protein At4g06598 isoform X1
RefseqXP_020532210.10.0uncharacterized protein At4g06598 isoform X1
TrEMBLW1NMK80.0W1NMK8_AMBTC; Uncharacterized protein
STRINGERM965050.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP42521219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.22e-62bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]