PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.380
Common NameAMTR_s00001p00261430, LOC18424437
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 302aa    MW: 32900.8 Da    PI: 8.3357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.380genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-133074147
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                              r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  evm_27.model.AmTr_v1.0_scaffold00001.380 30 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 74
                                              789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-172480IPR009057Homeodomain-like
PROSITE profilePS5129415.4082579IPR017930Myb domain
TIGRFAMsTIGR015571.3E-182877IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.9E-72880IPR009057Homeodomain-like
SMARTSM007175.3E-112977IPR001005SANT/Myb domain
PfamPF002492.4E-113074IPR001005SANT/Myb domain
CDDcd001671.65E-83275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALPSLGSLT TSSDDSSKKI RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG  60
SKTVIQIRSH AQKYFLKVQK NGTSEHVPPP RPKRKAAHPY PQKASKNVSV PPQAHVIFPP  120
STSCRLESGY SHRTDSSSLL RNSTTTGAVS SWAHPTVSPL SVPNAPKDDV GPAGTVAVNN  180
CSCSSTESSP RPWAASETAD QGNHGTQLPV MPDFSQVYSF IGSVFDPNTT GHLQKLKAMD  240
PIDVETVLQL MRNLSVNLSS PEFEDHRKLL SSYDVDTEEA GPVSAKHSDK TGDGTIKDGC  300
K*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829087.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-109RVE6_ARATH; Protein REVEILLE 6
TrEMBLW1NLT10.0W1NLT1_AMBTC; Uncharacterized protein
STRINGERM965030.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.27e-94MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]