PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.192
Common NameAMTR_s00001p00193150, LOC18424246
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 252aa    MW: 28779.7 Da    PI: 7.0741
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.192genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.2e-5271351128
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 
                                               lppGfrF Ptdeelvv+yL +k+ ++ +++   i+e+++yk++Pw+Lp+k+  +e+ewyfFs+r++ky+
  evm_27.model.AmTr_v1.0_scaffold00001.192   7 LPPGFRFYPTDEELVVHYLSQKAMSDAFHF-PLITEIELYKFDPWELPEKAVFGEREWYFFSPRERKYP 74 
                                               79*************************999.78***************8877899************** PP

                                       NAM  70 tgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                               +g+r+nra+ sgyWkatg+dk++++   ++ ++glkk+Lvfy+g+ap+g+ktdW+mheyrl
  evm_27.model.AmTr_v1.0_scaffold00001.192  75 NGTRPNRAAVSGYWKATGTDKSIMAGkeQQIKIGLKKSLVFYRGKAPNGTKTDWIMHEYRL 135
                                               ************************974344459**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-603159IPR003441NAC domain
PROSITE profilePS5100558.7927159IPR003441NAC domain
PfamPF023655.2E-278135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVMLDSLPPG FRFYPTDEEL VVHYLSQKAM SDAFHFPLIT EIELYKFDPW ELPEKAVFGE  60
REWYFFSPRE RKYPNGTRPN RAAVSGYWKA TGTDKSIMAG KEQQIKIGLK KSLVFYRGKA  120
PNGTKTDWIM HEYRLANSIL PKRTTHKVDD WALCRIYNKS SNGATVTQMS GPSMKPMPDE  180
ARFRLPPLVD EPVVNLHQPS WASSLPTQPQ PPTQPQPFFE FGLDDWLESL PSSGDDAAWP  240
PTYYISGDQI K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-71616316169NO APICAL MERISTEM PROTEIN
1ut4_B6e-71616316169NO APICAL MERISTEM PROTEIN
1ut7_A6e-71616316169NO APICAL MERISTEM PROTEIN
1ut7_B6e-71616316169NO APICAL MERISTEM PROTEIN
3swm_A7e-71616319172NAC domain-containing protein 19
3swm_B7e-71616319172NAC domain-containing protein 19
3swm_C7e-71616319172NAC domain-containing protein 19
3swm_D7e-71616319172NAC domain-containing protein 19
3swp_A7e-71616319172NAC domain-containing protein 19
3swp_B7e-71616319172NAC domain-containing protein 19
3swp_C7e-71616319172NAC domain-containing protein 19
3swp_D7e-71616319172NAC domain-containing protein 19
4dul_A6e-71616316169NAC domain-containing protein 19
4dul_B6e-71616316169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828899.10.0NAC domain-containing protein 2
SwissprotA0SPJ65e-71NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLW1NM570.0W1NM57_AMBTC; Uncharacterized protein
STRINGERM963150.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.15e-72NAC family protein
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]