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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00001.1 | ||||||||
Common Name | AMTR_s00001p00009420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Nin-like | ||||||||
Protein Properties | Length: 621aa MW: 68573.9 Da PI: 4.8843 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 21.3 | 5.3e-07 | 597 | 621 | 2 | 26 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLg 26 ek+isl++l++yF++++kdAAk++g evm_27.model.AmTr_v1.0_scaffold00001.1 597 EKNISLQVLRQYFAGSLKDAAKSIG 621 89*********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MQEAVNPQES LFGSLSEAMD FDFIDEALDG GSWLDAVDCS DLSQPGPSTS SSLLDPSYFV 60 SPVYINTQNP QNTDQDYQEQ AVIFENPMEN PSENLETQSM NHNSISKLGF PDSQWPPNST 120 TGSIMKRWVN PNLVSPVNDR LMQAIQIIKE STSNGDVLVQ IWVPVKKGDS HVLTTCEQPF 180 ILDPRSQTLT RYRTVSMNYF FSAGEGSGGV LGLPGSNEYP RVNYAQEFDV RGTLALPVFE 240 KGSRACLGVV EVIMTDQKIN YAPELDKICR ALQAVDLRSS EVLTPPYVKV RNDGFQSAFP 300 EILDVLKAVC ETHRLPLAQT WVPCIQHGKK GSRHTDESYK DCVSTADGAC YVRDSEMTGF 360 QEACSEHHLF KGQGVAGKAF ATNQPCFSPD VTSFSKMDFP LVHYARVFGL GAAVAIRLKS 420 TYTGAADYVM EFFLPVDCRD NEEQKMMLNS LSVTIQQVCR SLRVVTDKEL EDEMMTQVND 480 VFCSDKMASK SRKADVENPS GDLNKSSSGV GASWREKTGV FLSSMPSGFQ EGRDIMVAQS 540 CHWGSPRVSC HEGGRFFKVE QHQDSANNSA DRGQSFVGEL DFSNAGKGPE KRRAKTEKNI 600 SLQVLRQYFA GSLKDAAKSI G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011629046.2 | 0.0 | LOW QUALITY PROTEIN: protein NLP1-like | ||||
Swissprot | Q10S83 | 1e-154 | NLP1_ORYSJ; Protein NLP1 | ||||
TrEMBL | W1NLI6 | 0.0 | W1NLI6_AMBTC; Uncharacterized protein (Fragment) | ||||
STRING | ERM96124 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 1e-146 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00001.1 |
Publications ? help Back to Top | |||
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