PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_996.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 382aa    MW: 42141.7 Da    PI: 6.5163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_996.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20176225255
                          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  evm.model.supercontig_996.1 176 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 225
                                  59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-33175235No hitNo description
PROSITE profilePS5103223.143176233IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-23176234IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-32176234IPR001471AP2/ERF domain
SMARTSM003807.1E-38176239IPR001471AP2/ERF domain
PfamPF008473.9E-14177225IPR001471AP2/ERF domain
PRINTSPR003673.8E-11177188IPR001471AP2/ERF domain
PRINTSPR003673.8E-11199215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MATAIDVYNS SSSNTGMIFS DPLREELMKA LEPFMKSSPS PTSLSSPSSP SSSSSFPSCS  60
FSQVFSNSQP NFYNPGIYSP SSSHMFYSGF SSYTYQNQMG MEQTGSVGLN HLTPSQILQI  120
QTQFLLQQQQ QQQLATMAAS KSSTEHNRSQ SLSFLSPKPV PMKHVAPSPP SKPTKLYRGV  180
RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YKLRGDFARL NFPHLKHQGE  240
FGDYKPLHSS VDAKLQAICQ SLAANSQKQG NSGKQRSVLG DEKTSTVISP NQPSKMEQAL  300
ELDCPVKTEC GSPGSDDSKA ENSSRSSPDS SDESSGSSSP ESEMTFFEFS DSQWNETESF  360
GLEKYPSLEI DWEAIRKLSE Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22175233160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-22175240470ATERF1
3gcc_A8e-22175240470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_996.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897669.10.0ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A1I9RH380.0A0A1I9RH38_CARPA; AP2/ERF-related protein 2.4b
STRINGevm.model.supercontig_996.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-54ERF family protein