PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_99.32
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 310aa    MW: 33948.1 Da    PI: 7.1781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_99.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.5e-052012401155
                                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  evm.model.supercontig_99.32 201 ARKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 240
                                  57788999*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.261190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-10200251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.51E-5202244No hitNo description
Gene3DG3DSA:4.10.280.105.4E-9204247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MESANLHHQH DQVEHNLAGT NSSCYGVTTS QAWTPNISLI NGASTSGNIV SINSTDQSAH  60
EYFPNFTEML NSSHSTTAMK MINKDHNTMS SSDLIPINAH NLHQFYSHNS SIFGNFTQIH  120
PTIDVSNFNI HMNLKAMDAG FNATCIQFSS TDLGKLSPSF PNQITSEEKR SSILVEKPNA  180
TEAPTKKSRL DSRASCPPFK ARKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ  240
NQIETLSVAY MKSSSGKKMV RRAQKGLTAE EVESDEDRQD LRSRGLCLVP LSCMAYVTSS  300
VGGEMLLHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_99.32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892811.10.0transcription factor bHLH110 isoform X1
TrEMBLA0A2I4ENQ52e-76A0A2I4ENQ5_JUGRE; transcription factor bHLH110
STRINGevm.model.supercontig_99.320.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-51bHLH family protein