PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_96.59

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Dof

Protein Properties

Length: 235aa MW: 25263 Da PI: 9.6107

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_96.59	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	49.2	1.1e-15	35	62	34	61
zf-Dof 34 kaCrryWtkGGalrnvPvGggrrknkks 61 ++CrryWt+GG+lrnvPvGgg+rknk+s evm.model.supercontig_96.59 35 RTCRRYWTEGGSLRNVPVGGGSRKNKRS 62 79***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.1E-11	35	61	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-8	35	61	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MEAAKWSQGF QEIGIVNPME QMVSNTCNRG MVERRTCRRY WTEGGSLRNV PVGGGSRKNK 60 RSIASSGSSS SSSSATTTTS ALSALTRLPD LNPPSLSQFS THQNPKTQKG QDLNLSFPEG 120 HHALELLGSA GRNINTSTMN AFIPQSMPDS NSLFPAGFPL QDYKPTISFS IDGLGNRPSN 180 IQGVQENHGG NRFFFPFGEM KQLPNGTADQ VEQQNKGQGP SVGYWNGMMG GGSW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_96.59

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021893095.1	1e-150	dof zinc finger protein DOF3.7-like isoform X5
TrEMBL	A0A061E0A4	1e-70	A0A061E0A4_THECC; F-box family protein, putative isoform 1
STRING	evm.model.supercontig_96.59	1e-172	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_96.59