PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_94.53
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 394aa    MW: 46596.8 Da    PI: 4.8373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_94.53genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063301321222
                                  EETTTTEEESSHHHHHHHHHH CS
                      zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                                   C  Cgk F++  + k+H ++
  evm.model.supercontig_94.53 301 YCVVCGKKFKNEKQWKNHEQS 321
                                  5*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.14E-23394IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1109.6E-24378IPR001623DnaJ domain
SMARTSM002712.3E-22668IPR001623DnaJ domain
CDDcd062576.64E-17765IPR001623DnaJ domain
PROSITE profilePS5007619.597776IPR001623DnaJ domain
PfamPF002262.4E-21873IPR001623DnaJ domain
PRINTSPR006251.5E-15927IPR001623DnaJ domain
PRINTSPR006251.5E-152742IPR001623DnaJ domain
PRINTSPR006251.5E-154868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.38E-13289341No hitNo description
SMARTSM004511.6E-5297331IPR003604Zinc finger, U1-type
PfamPF121711.9E-10300325IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280302324IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MASEKRCLYE VLGLQKDCTA DEIRSAYKRL ALQRHPDKLV QSGLSQAEAT AQFQELAQAY  60
EVLSDPKERA WYDSHRSQII FSDLNSSSNS VPNSIIPNLF SYFSTSVFSG YSDSGKGFYK  120
VYADLFNRTY LNEINFVKKL GLGLDSVREA PIMGNLDSPY EQVTAFYNYW LRFTTVMDFC  180
WVDQYDVMAG PNRKSRRVIE EENKKLRKKA RREYNDTVRS LAQFVKKRDK RVIYMAAKRN  240
AEMERKKEEE RERKKKMEKE RLERASAYEE PEWARVEEED DGLEEFEGDS DKKENEDKEL  300
YCVVCGKKFK NEKQWKNHEQ SKKHRKKLAD LRESFADEDE ESEEEREEEG IMDEFEETSE  360
NVDELRERFR EGLEMGDEGE ENEDRIDQRL MRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211KKLRKKARR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_94.53
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893264.10.0LOW QUALITY PROTEIN: DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-165JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2C9VP090.0A0A2C9VP09_MANES; Uncharacterized protein
STRINGevm.model.supercontig_94.530.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Representative plantOGRP354177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-144DNAJ heat shock N-terminal domain-containing protein