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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_94.52 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 24297.4 Da PI: 9.8994 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00084 | 185 | 203 | 3 | 21 |
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cg+ F ++ L++H+ evm.model.supercontig_94.52 185 CDRCGEEFESRNKLHKHLA 203 *****************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.369 | 183 | 212 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 185 | 207 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVSGHKSRKK DMDSKYEDEI VQTQDGIENV NDELDFMEYN NRKSTRKNRG SKKERVKRNS 60 GVATKSDVDG TKEQNKETEG NEDRKERGQN NREAAVNHDV NERKCQKQET EGNGNSHFTE 120 SSFHSPMDNE SFDKRTDNHS GRNHKATEQS LGRKEARKKD MDAKSKGSSK GKKVKGSSKN 180 SSNMCDRCGE EFESRNKLHK HLADSGHASL KFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_94.52 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021893264.1 | 1e-148 | LOW QUALITY PROTEIN: DNAJ protein JJJ1 homolog | ||||
STRING | evm.model.supercontig_94.52 | 1e-152 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16372 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 6e-12 | DNAJ heat shock N-terminal domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_94.52 |