PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_92.40
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 271aa    MW: 29634.7 Da    PI: 8.6916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_92.40genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05242264223
                                  EETTTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                  +Cp+C++ F+++  L+ H  + H
  evm.model.supercontig_92.40 242 VCPKCSRGFRDPVALVEHVERdH 264
                                  7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.109.6E-4929IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.107.1E-1168123IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.44E-970121No hitNo description
PfamPF014281.5E-878118IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.933204232IPR007087Zinc finger, C2H2
SMARTSM003550.12204227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206227IPR007087Zinc finger, C2H2
SMARTSM003556.7241264IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280243264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNTGYEKFSQ VYCLEHRSYF KHNCPKADRG DVTVVICPLC AKGVRLNPDE DPNITWEAHV  60
NTECDPSNYD KVTKKKKCPV PGCREVLTFS NTIKCRDCTL DHCLKHRFGP DHKCPGPKKP  120
DAGFAFMSLL SRSRKEESKT YQAPATSSSK WTSTFLSAAS TVRASAEASM AKLSSEISQK  180
LQIARDGVVQ GNNSNGNGGA VKMETCPQCG AKFLSVAALV DHVEKVHERN SKQGRAKVTI  240
DVCPKCSRGF RDPVALVEHV ERDHGGTSIA *
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_92.40
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893395.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ8VZ421e-111SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A1Q3ANI21e-150A0A1Q3ANI2_CEPFO; Zf-AN1 domain-containing protein/zf-C2H2_6 domain-containing protein
STRINGevm.model.supercontig_92.400.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-113C2H2 family protein