PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_912.3

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 66aa MW: 7584.21 Da PI: 4.6391

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_912.3	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	53.1	7e-17	27	57	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + AtPk +l+lm+vkgL+++hvkSHLQ+YR+ evm.model.supercontig_912.3 27 DGATPKLVLQLMNVKGLSIAHVKSHLQMYRS 57 569***************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-15	27	58	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-6	27	58	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-11	27	59	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MGDDEKKERW LDLNKEAEVE DEEDDDDGAT PKLVLQLMNV KGLSIAHVKS HLQMYRSKKL 60 DHSGQX

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_912.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016688072.1	2e-17	PREDICTED: putative Myb family transcription factor At1g14600
Refseq	XP_016688073.1	2e-17	PREDICTED: putative Myb family transcription factor At1g14600
Refseq	XP_026664016.1	1e-16	probable transcription factor KAN4 isoform X1
TrEMBL	A0A1U8JCN1	4e-16	A0A1U8JCN1_GOSHI; putative Myb family transcription factor At1g14600
TrEMBL	A0A287TI09	2e-15	A0A287TI09_HORVV; Uncharacterized protein
TrEMBL	A0A2P5QSJ2	2e-15	A0A2P5QSJ2_GOSBA; Uncharacterized protein
STRING	evm.model.supercontig_912.3	2e-39	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-16	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_912.3