 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm.model.supercontig_90.68 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
MYB |
| Protein Properties |
Length: 348aa MW: 39575.3 Da PI: 5.5913 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_90.68 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.7 | 1.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEde+l ++++ G g+W++ ++ g++R++k+c++rw +yl
evm.model.supercontig_90.68 14 KGPWTVEEDEKLTAYINKNGLGSWRSLPKLAGLNRCGKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 56.7 | 5.5e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++++eE++l++++++ lG++ W++Ia++++ gRt++++k++w+++
evm.model.supercontig_90.68 67 RGKFSQEEEKLIINLHAVLGNK-WSRIASHLP-GRTDNEIKNFWNTH 111
89********************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MGRSPCCNDE NLKKGPWTVE EDEKLTAYIN KNGLGSWRSL PKLAGLNRCG KSCRLRWTNY 60
LRPDIKRGKF SQEEEKLIIN LHAVLGNKWS RIASHLPGRT DNEIKNFWNT HIRKKLLKMG 120
VDPTTHKPRI DLNHLLLGLS HLIFNADDQF SSMINLETAL KLQADAAQLA KTQLLQNLLK 180
SILSPTKLPP YFPNLSHNYI NNMTEPNWKL HNDPNCSSSN APTPLLQENY DEGEAMMNEL 240
WACFDQKDGA HQYLCNENGE ENENPVSKLV SGADDQDYNN KNNNDNNNTD QMVSSSTQMP 300
QLLSASSSPT YDMFQTTCDN LIMDDDDATY WNNILDDHDQ YCNKLIN*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4 | 28 | 2646 |
| Representative plant | OGRP5 | 17 | 1784 |
