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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_90.64 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
C3H |
| Protein Properties |
Length: 314aa MW: 32406.5 Da PI: 7.373 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_90.64 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31.7 | 2.7e-10 | 98 | 122 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC+ f++ GtC+y +C+FaH+
evm.model.supercontig_90.64 98 FKTKLCCKFRA-GTCPYVTNCNFAHS 122
69*********.*************8 PP
|
| 2 | zf-CCCH | 18.8 | 2.9e-06 | 179 | 204 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
yk + C+ f+ C+yGd+C+F H+
evm.model.supercontig_90.64 179 YKGRHCKKFYTEEGCPYGDNCTFLHD 204
78888********************7 PP
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| 3 | zf-CCCH | 42.3 | 1.3e-13 | 280 | 305 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
evm.model.supercontig_90.64 280 WKTRICNKWEITGYCPFGNKCHFAHG 305
8************************8 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 2.8E-14 | 95 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.18E-8 | 95 | 128 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.868 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0015 | 97 | 123 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-7 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.23 | 178 | 206 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.9E-9 | 178 | 206 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.3E-7 | 178 | 206 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.058 | 178 | 205 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.4E-16 | 273 | 308 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.68E-10 | 276 | 306 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.0E-8 | 279 | 306 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.225 | 279 | 307 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.5E-11 | 280 | 305 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MDCGRDSGGN VVHVITGNMP AENWIPNPND QVWATEEDYR VWTNPEASND NGSSSNYDQR 60
PSQTRSGSEQ PPSKKNRNSQ EANSSTSNRA KAIGKMFFKT KLCCKFRAGT CPYVTNCNFA 120
HSVEELRRPP ANWQEIVAAH EEEKAAAAAA GNPVAEPREE FQIPSLGSSA FGGEMGRSYK 180
GRHCKKFYTE EGCPYGDNCT FLHDEQSKNR ESVAISLGPG GYGGSAGSGS GAAVATAAAG 240
AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AAQNVKPSNW KTRICNKWEI TGYCPFGNKC 300
HFAHGAADSL AML*
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