![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_90.22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 363aa MW: 40045.3 Da PI: 7.614 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.1 | 9.8e-06 | 28 | 50 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f++ G C yGdrC+ +H+p evm.model.supercontig_90.22 28 KVCSFWLS-GRCVYGDRCRNHHPP 50 68*****9.**********99996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.103 | 24 | 51 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 25 | 50 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 25 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00320 | 6.0E-7 | 57 | 96 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 5.3E-11 | 59 | 116 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 2.47E-45 | 60 | 105 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 3.5E-7 | 60 | 96 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.951 | 64 | 105 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 19.565 | 64 | 268 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 4.3E-7 | 83 | 97 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 83 | 97 | IPR019775 | WD40 repeat, conserved site |
Gene3D | G3DSA:2.130.10.10 | 6.4E-34 | 130 | 359 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 5.4 | 134 | 172 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 2.47E-45 | 141 | 350 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 2.2E-7 | 182 | 219 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 4.8E-7 | 184 | 219 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 12.313 | 189 | 228 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 206 | 220 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 4.3E-7 | 206 | 220 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 0.0012 | 222 | 259 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0032 | 225 | 258 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 9.105 | 229 | 258 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 4.3E-7 | 246 | 260 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 120 | 262 | 306 | IPR001680 | WD40 repeat |
SMART | SM00320 | 6 | 309 | 346 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence Send to blast |
MAAPNVWRRT VETPFKNVVK NKPPPSKKVC SFWLSGRCVY GDRCRNHHPP FLNTDGHLSL 60 LGRLNGHKGD ICGICLPTDS DKLLTGYRDG TVRIWDCNSG KCVSVLNLQN QIGSMHCEGS 120 WIFYGLPNLL QARKDNEVYE LDGPVGQVYA ITSARSDTVF AGAQNGDILV WRGFPSPPNS 180 NPFRLIGTLK GHTTPVTCLT VGGGKLYSGS MDGTVRVWDT ESFVCINTVE AHSDCITSLV 240 YWGVYLITSS RDKSIKIWAT IHEEGLQEAY THQERHSILA LHGMNDANNK PVICCSCEDS 300 SVRIYELPSF MERGRLLSKR NVHSIQSCPY NLFFTGDGAG TVTVWNWLED PQPQGINGSS 360 SS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 5e-17 | 61 | 346 | 8 | 321 | Tako8 |
6g6n_A | 5e-17 | 61 | 346 | 8 | 321 | Tako8 |
6g6n_B | 5e-17 | 61 | 346 | 8 | 321 | Tako8 |
6g6n_C | 5e-17 | 61 | 346 | 8 | 321 | Tako8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_90.22 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021893583.1 | 0.0 | zinc finger CCCH domain-containing protein 48-like | ||||
TrEMBL | A0A251QDW7 | 1e-113 | A0A251QDW7_PRUPE; Uncharacterized protein | ||||
STRING | evm.model.supercontig_90.22 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1065 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51980.1 | 1e-99 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_90.22 |