PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_9.98 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 151aa MW: 16288.9 Da PI: 8.4896 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.7e-05 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H evm.model.supercontig_9.98 57 FECQYCHREFANSQALGGHQNAH 79 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-4 | 55 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.15E-6 | 55 | 84 | No hit | No description |
Pfam | PF13912 | 2.3E-6 | 56 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.593 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MSTDHNAVEQ GSINGDGYIN SEKPSGNPVL KLFGFPVTAC EDARVTAQHG GDTIRRFECQ 60 YCHREFANSQ ALGGHQNAHR RERRPRKGHY FYSKHRTACI ATRSGPFDYS SYGLAGLPCQ 120 TPATSNNVNG GDVVDLRLSL APSSTSSPST * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_9.98 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906771.1 | 1e-109 | zinc finger protein 7-like | ||||
TrEMBL | A0A2I4E136 | 3e-21 | A0A2I4E136_JUGRE; zinc finger protein 8-like | ||||
STRING | evm.model.supercontig_9.98 | 1e-109 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20638 | 4 | 5 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 3e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_9.98 |