PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_9.313

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bZIP

Protein Properties

Length: 201aa MW: 22934.7 Da PI: 9.4935

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_9.313	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.6	3.1e-09	9	59	13	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ evm.model.supercontig_9.313 9 NRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 59 **************************************9999888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.4E-9	1	61	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.71E-10	4	52	No hit	No description
CDD	cd14703	9.12E-20	4	51	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.1E-8	9	55	No hit	No description
Pfam	PF00170	2.8E-7	9	55	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.576	9	62	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGMKVIWANR QSAARSKERK MRYIAELERK VQTLQTEATS LSAQLTLLQR DTNGLTAENS 60 ELKLRLQTME QQVHLQDALN DALKEEIQHL KVLTGQALPN GAPIMNFASY GAGQQFYANN 120 HAMHTLLTAQ QFQQLQIHSQ KQQQQQFQQH QLHQLQQQQL QQQEQQQQQQ QQSGDLRIKG 180 SMPSPNQKDN TSDVNPPTKD *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_9.313

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC771291	7e-80	KC771291.1 Camellia sinensis bZIP transcription factor family protein 11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021906842.1	1e-137	probable transcription factor PosF21
Swissprot	Q04088	8e-67	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2P5G0N3	5e-95	A0A2P5G0N3_TREOI; Basic-leucine zipper transcription factor
STRING	evm.model.supercontig_9.313	1e-141	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	2e-66	bZIP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_9.313

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]