 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_9.186 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
C3H |
| Protein Properties |
Length: 372aa MW: 39919.1 Da PI: 8.5509 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_9.186 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 36.6 | 7.6e-12 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++ + C +++rtG+C yG+rC+++H++
evm.model.supercontig_9.186 49 PGVPDCAYYMRTGFCGYGARCRYNHPR 75
5789*********************96 PP
|
| 2 | zf-CCCH | 40.8 | 3.5e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C+f+++tGtCk+G++CkF+H++
evm.model.supercontig_9.186 96 EPPCQFYLKTGTCKFGASCKFHHPK 120
79*********************96 PP
|
| 3 | zf-CCCH | 37 | 5.5e-12 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tG+Ck+G +CkF+H++
evm.model.supercontig_9.186 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166
7899********************97 PP
|
| 4 | zf-CCCH | 36.9 | 6.1e-12 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C++++rtG Ck+G++C+++H++
evm.model.supercontig_9.186 297 PGEPECQYYLRTGDCKFGSSCRYHHPR 323
5799*********************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 2.1E-6 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.192 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-9 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-6 | 53 | 76 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.7E-5 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.1E-7 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.901 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.22E-6 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-10 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.3E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.821 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.36E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.4E-9 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.0E-6 | 296 | 323 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.817 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-9 | 298 | 323 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.92E-6 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.4E-5 | 302 | 324 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 372 aa
Download sequence Send
to blast |
MELYGRNAGR NGSQSGHQPE WSSGGPETGL EESMWQLGLG SGEAYPERPG VPDCAYYMRT 60
GFCGYGARCR YNHPRNRAAV EAAVRATGEY PERIGEPPCQ FYLKTGTCKF GASCKFHHPK 120
NAGGSMSNVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SMPASAPQFY 180
PPVQSPSVPM PEQYGGASTS LRVARPPLLP GSYVQGAYGP MLVSPGVFSI QGWSPYSAPV 240
SPVPSPGAQP TVGATSLYGV TQLSSSTPSL GGAYPSLPSS AGPLGNSQRE QTFPERPGEP 300
ECQYYLRTGD CKFGSSCRYH HPRDRIPPRT NCALSPIGLP LRPGCKLVLS TCKMGTVSLE 360
VHVNLIIPWE Q*
|
