 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_9.175 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
Family |
CO-like |
Protein Properties |
Length: 384aa MW: 43183.1 Da PI: 4.8622 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_9.175 | genome | ASGPB | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 22.2 | 2.8e-07 | 19 | 62 | 2 | 39 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
++r C+ +++ + l+C+ ++ lC +C e H+ H++
evm.model.supercontig_9.175 19 QKRLCDYCNNTTALLYCRADSAKLCFSCDREVHSAnqlftkHSR 62
7899******99*********************65777777776 PP
|
2 | zf-B_box | 33.5 | 8.5e-11 | 62 | 107 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
+ + C+ +++ ++++fCe+ q+ lC++C e+H + H+++p+
evm.model.supercontig_9.175 62 RSQLCDVCDNSPASIFCETEQSVLCQNCDWETH-NlsvslvHDRRPI 107
5689*****************************.6689999988876 PP
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3 | CCT | 39.3 | 2.3e-14 | 346 | 373 | 16 | 43 |
CCT 16 kFeKkirYesRKavAesRpRvKGrFvkq 43
+++K+irYesRK++Ae R R+KGrF+k
evm.model.supercontig_9.175 346 RYDKQIRYESRKVRAEGRTRIKGRFAKV 373
69************************96 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MKPTDSLPEN PAMKSRNQQK RLCDYCNNTT ALLYCRADSA KLCFSCDREV HSANQLFTKH 60 SRSQLCDVCD NSPASIFCET EQSVLCQNCD WETHNLSVSL VHDRRPIEGF TGCPTVTELV 120 AIVGLEGLGK KALFSSEDDG KLTGLNQSDI DGLSELLVWE TPTFTSLDDL IVSGELDHNF 180 RAMDVPSLPN RNAACGQHKE DILSQLRELA KSENLSYDNE DAEPVVNFQL LATEWNMQHG 240 NTFVGSQHEE DQISFPTCQA AGFKWIGDRD EPADQDFLPS LLQKYIREDS TISNKLIDIS 300 GSINQTNDVH ESISQEPISN KTLPPFPRVA QHEFLNSQER DSAISRYDKQ IRYESRKVRA 360 EGRTRIKGRF AKVDRGNTDF KIR*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G47890.1 | 7e-95 | B-box type zinc finger protein with CCT domain |