PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.105
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 643aa    MW: 70416.7 Da    PI: 5.7975
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.105genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.51.4e-08143164122
                      G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                                  kpr++W+ eLH++Fv av+qLG
  evm.model.supercontig_9.105 143 KPRVVWSVELHQQFVAAVNQLG 164
                                  79*******************5 PP
2G2-like48.71.7e-151932242455
                      G2-like  24 sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                  +++A+Pk+ilelm+v gLt+e+v+SHLQkYRl
  evm.model.supercontig_9.105 193 HHEAVPKKILELMNVAGLTRENVASHLQKYRL 224
                                  689****************************8 PP
3Response_reg48.45.2e-1767341109
                                  HHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                 Response_reg  41 ekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                  ++ +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +  Ga d+l Kp+ +e+l +
  evm.model.supercontig_9.105   6 KNGFDIVISDVHMPDMDGFKLLERVGLEM-DLPVIMMSADESKSVVMKGVTHGACDYLIKPVRIEALKN 73 
                                  444**********************6644.8**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011030.185179IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363921.4E-1371634IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23007.4E-272104No hitNo description
SuperFamilySSF521721.18E-21589IPR011006CheY-like superfamily
CDDcd001561.76E-16578No hitNo description
PfamPF000724.1E-14673IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466897.53E-15140168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-27142229IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-13194224IPR006447Myb domain, plants
SuperFamilySSF466897.53E-15197228IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MLRENKNGFD IVISDVHMPD MDGFKLLERV GLEMDLPVIM MSADESKSVV MKGVTHGACD  60
YLIKPVRIEA LKNIWQHVVR KRKNEWKELE QSGSVEEGDR QQKQTEEADY SSSVNEGNWR  120
SSKKRKDEED ETEDRDDTST LKKPRVVWSV ELHQQFVAAV NQLGIDSMNL LPESPNFLIL  180
VGCMFICDLN NAHHEAVPKK ILELMNVAGL TRENVASHLQ KYRLYLRRLS GVSQHQSNLN  240
NSFINPQEAN FGPLSSLNGI DLQTLAVTGQ LPAQSLATLQ AAGLGRSSAK SGISMPIVDQ  300
RNLFSFENPK LRFAEAQQQH MTNSKQMNLL HGIPTAMEPK QLASLHHSAQ SIGNMNMQVN  360
THGGQSSQNN ALLMQMAQSQ SRGQILYENS GSHATRLPSS ITQPILTSNG IGASVSARTG  420
IPDNGRGGAY NPVSQASSML NFPLNHNAEL PGNSFPLGNA PGLSSLASKG AFQEDVNSDI  480
KGSGGFMPSY DIFNDLHQHK PQDWELQNVG LTFDASQHSN PLQSSLDVTP SVLVSQGFSS  540
NQRNGQNGNA TAVGKAMFST GEGPEHGNVQ NVVNQNLNSL FTDNSIRVKS ERVSEARIPS  600
SLFPDQFGQE DLMSALLKQQ EGIGPAENEF DFDGYSMDNI PV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_9.105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906934.10.0two-component response regulator ARR2 isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A061EWK10.0A0A061EWK1_THECC; Two-component response regulator
STRINGevm.model.supercontig_9.1050.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]