PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_87.14

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 307aa MW: 34747.5 Da PI: 10.0328

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_87.14	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.1	4.6e-29	16	69	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+A Pk +l+lm+vk+Ltl+hvkSHL +YR+ evm.model.supercontig_87.14 16 PRIRWTTTLHSAFVNAVNALGGPERAAPKDVLQLMNVKDLTLAHVKSHLHMYRT 69 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-25	13	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.38E-12	15	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-20	16	69	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MSRTAQSTQA CRRQVPRIRW TTTLHSAFVN AVNALGGPER AAPKDVLQLM NVKDLTLAHV 60 KSHLHMYRTV KRVSGVSEAP SMKISYPAEK ITSNHLIIRV FPLDRICLMA EREYIIMSNV 120 HHISPSGSNN PAENYIRQKE YITIEVTNVN AERTEVSFFK LSKATLEHLF AIANFVLELL 180 AAVFDQLSSS DKPGCALIGM SISFVAMFIC IIELVFKGRR QKVTWRWRGR KSWFYYPSSS 240 QMRFGTFTDI VGLTCAGFQF IFAAINYGFL SHHVNNPIKI SVWPVIFAFG LLCSEFCKDP 300 EKKNFP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	17	71	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_87.14

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021893794.1	0.0	uncharacterized protein LOC110811569
TrEMBL	A0A067DRX4	4e-49	A0A067DRX4_CITSI; Uncharacterized protein (Fragment)
STRING	evm.model.supercontig_87.14	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3838	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	3e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_87.14