PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_85.120
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 371aa    MW: 41056.5 Da    PI: 5.5811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_85.120genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08212259455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  evm.model.supercontig_85.120 212 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 259
                                   8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-15206277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-8206263No hitNo description
PROSITE profilePS5088814.519208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14209276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6212259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDLIGGIIAR SSPREPEPDE TVLDSLQFNE EIHRMMAAPP ENGSSFTALL ELPATQAMEL  60
LHSSDSGNSP APRAGDDDLK HSFQSFDGTM NFPSNTALIE RAARFSLFAG EHISNNSPET  120
SSVPSNSSGN LERVKSEPAE TESSQPLVSD PAAENQSHNQ NQRSAVKRKE REKKVAKGSA  180
KKTKSAANDS SEDAEKLPYV HVRVRRGQAT DSHSLAERAR REKINARMKL LQELVPGCNK  240
ISGTALVLDE IINHVQSLQR QVEFLSMRLA TVNPRVDFNL DNILAAESGS LMDSNFPSMV  300
MPMMWPEVPV SGNRQQYQQQ QWHFDAFHQP VWGREEENHH NFTTPENSLL SYDSSANSAT  360
LHSSQLKMEL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_85.120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894046.10.0transcription factor bHLH48-like
SwissprotQ3EAI11e-118BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A061EXK61e-170A0A061EXK6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGevm.model.supercontig_85.1200.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-112bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]