PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_85.115
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 278aa    MW: 30180.8 Da    PI: 9.1206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_85.115genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-13205250655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +++Er RR ri +++ +L+el+P+     +k  s a++L +AveYIk+Lq
  evm.model.supercontig_85.115 205 SIAERVRRTRISERMRKLQELVPNM----DKQTSTADMLDLAVEYIKDLQ 250
                                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.428199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16202265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-12203252No hitNo description
Gene3DG3DSA:4.10.280.101.9E-14204260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-12205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10205250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDSSYELLAM DHQSQGKSIS SNLIRQSSSP AGLFANLSAQ NGYATMKSVG SYGGVNGTDG  60
GGLSPSNRLK SLYSFSSRLP SSAMLSQISE IGSESIGANG HDDGKLGNGT GDARFYNPGF  120
PSGGWHNSLS FTENFSGLKQ ENDNDGKLYS GSQDGESGNR IHMLSHSLSL PKASTEMVIE  180
KFLQFQDSVP CKIRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD KQTSTADMLD  240
LAVEYIKDLQ KQFKTLSDNR ANCKCLNTQK PIPNQII*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_85.115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894047.10.0transcription factor bHLH130-like
SwissprotQ66GR35e-91BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A1R3HIJ61e-146A0A1R3HIJ6_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_85.1150.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]