PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_84.89
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 403aa    MW: 45105.5 Da    PI: 8.909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_84.89genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12335380655
                                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +++Er RR ri +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  evm.model.supercontig_84.89 335 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 380
                                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16332389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.46E-12333384No hitNo description
Gene3DG3DSA:4.10.280.102.5E-15334390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9335380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-14335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MESDLHHRRH HLADHQPLYD QKPMNSGLTR YQSAPSSYFS SFSDRDFCEE FLNRPTSPET  60
ERIFARFLSA TSGNTDNAIL DQSFRDIRDS SSVKEPVREM EPQTQIMATI KTETEVLQKQ  120
NSYSSVSQSF YQTHQAQNQQ QLPNQNSGSG MDYRMETTMR MDRLPPTKTG GGNSTPNLIR  180
HSSSPAGLFA NINIDNRFGV LRGMGDFGSG NKRESSFTSA IRPPSSSSGL MQTITEMGEK  240
NMGGNSPENA GLYTVGSWDE VAILSDEIAG VKRIRDDDKA LTKNVEAASM RPPLLAHHLS  300
LPKSSAEISA IEKFFQDSVP CKIRAKRGCA THPRSIAERV RRTRISERMR KLQDLVPNMD  360
KQTNTADMLD LAVDYIKDLQ KQVKTLSDNR AKCLCSNKQQ QK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_84.89
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894141.10.0uncharacterized protein LOC110811853
RefseqXP_021894142.10.0uncharacterized protein LOC110811853
RefseqXP_021894143.10.0uncharacterized protein LOC110811853
RefseqXP_021894144.10.0uncharacterized protein LOC110811853
RefseqXP_021894145.10.0uncharacterized protein LOC110811853
RefseqXP_021894146.10.0uncharacterized protein LOC110811853
TrEMBLA0A061GZ591e-168A0A061GZ59_THECC; DNA binding protein, putative isoform 2
STRINGevm.model.supercontig_84.890.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.12e-76bHLH family protein