PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_84.88 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 28822.3 Da PI: 8.1439 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31 | 8.4e-10 | 32 | 80 | 2 | 50 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktek 50 +Y+eYAk+vGF + k +s++s+ ++e+++++f C ++ +e+ ++ ++ evm.model.supercontig_84.88 32 YYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRKHAISERLDELQS 80 9***********************************9998888777333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.2E-8 | 32 | 86 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDTSNVPVST GNTVLEPRND MEFESHEAAY SYYKEYAKSV GFGTAKLSSR RSRASKEFID 60 AKFSCIRKHA ISERLDELQS KVRRYNDLCR RAIILGEEGS LSQESYDIAL CAIREALKQC 120 AIVNNSIEND ARPSNPAIQT VCTVEEGNQC SITSKEKVSD PTKYTGTNKT PRRTEAGRDS 180 NQSSASGKGK QVPQFGVSGV GNQDGLHQME LVDMRPAQLH NVMPPQLHNI MPAMFHNVPP 240 PQFQNVAPPR HLHDNRPPH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_84.88 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894136.1 | 1e-138 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Refseq | XP_021894137.1 | 1e-138 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Refseq | XP_021894138.1 | 1e-138 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Swissprot | Q6NQJ7 | 1e-39 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A5BA92 | 2e-66 | A5BA92_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_84.88 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 1e-41 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_84.88 |
Publications ? help Back to Top | |||
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