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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_83.75 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family |
C3H |
Protein Properties |
Length: 413aa MW: 46098.5 Da PI: 7.8791 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_83.75 | genome | ASGPB | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 122 | 143 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C+ f+r+G C++Gd C FaHg
evm.model.supercontig_83.75 122 VCSEFRRGGGCSRGDECEFAHG 143
7********************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MTTICAEQHK LLHHHHHHLK KPTIEIPPRK LLFTSNKTYD QLPSPDSPNM LNKHLPRNTP 60 TDNDSDSDSD DPYSTDHFRM YEFKVRRCTR SRSHDWTDCP FAHPGEKARR RDPRRFHYSG 120 TVCSEFRRGG GCSRGDECEF AHGVFECWLH PSRYRTEACK DGKNCKRKVC FFAHSPRQLR 180 ILPEVLGSNC TSNSYLSPIT NHIKTNGNSY SKGTPSCCCL FCRTVSESPT STLLGLSHLS 240 RSPSLSPPLS PVKERRASTA AVFSPFSRYS DRLGKKIGVG GYKEMLSELK NSLEAMTINE 300 VLSSSSPPST TSPSPLSLPG GNCSNSSSSI DVPWLEICFN GYQDFEQQKQ QLVNLSPSTP 360 IGRSGSGDLF DENFSRQHGS GDYEKILGIN NDNENGSGCP DVDLEWVNEL VM*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. |