PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_82.59
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 531aa    MW: 57202 Da    PI: 4.7949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_82.59genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11309354555
                                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  h+++Er RR++i +++ +L+el+P++      K +Ka++L + +eY+k Lq
  evm.model.supercontig_82.59 309 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 354
                                  99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-17302364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-12302358No hitNo description
PROSITE profilePS5088817.161304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16306363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-9309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDEYLDHYFS SSSWSDMKTA ERLSWDCVEP NKPDVLLSSS LEVFENDEKS SPVRMIISSP  60
NVECLTAKDT SSIVLGGESD YAGENCLLSR GDQLQQNGEN CNRNSSSGVL NGRVNFGNRV  120
ECSPAIPSSV SYTEAVFTPD SVNLLPPKHI TSIDDITCLS FTKMGYVGCN GTELSDDLRS  180
LQDLSTLSPI SQLLPPSFDD VYSLSHVMGQ ERKQGFAFQG ENADSDGHKY VEMNKILQHD  240
NLSVSVAVQG KQDLQKNSLP SSASEPQITM TTVGLPSLLE NSSNTHSGGC HGTGKPRVRA  300
RRGQATDPHS IAERLRREKI AERMKNLQEL VPNSNKTDKA SMLDEIIEYV KFLQLQVKVL  360
SMSRLGAAGA VVPLITDGQA EGSNGLSFST SAGQGVDFLP SADQIAFEHE VIKLMESNVT  420
MAMQYLQSKG LCLMPIALAA AISSEKASPV GTAADERERL GLAGCLHQNN SNNSSNSSLS  480
GLGPHQMSSN STTLTGKLNK EGLLSSCCNQ TVKQEDLSNC TAENETLKII *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_82.59
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4717972e-36AM471797.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X221977.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894361.10.0uncharacterized protein LOC110812011
TrEMBLA0A2H5NBL41e-176A0A2H5NBL4_CITUN; Uncharacterized protein
STRINGevm.model.supercontig_82.590.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16266914
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-60LJRHL1-like 3