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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_81.126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GRAS | ||||||||
Protein Properties | Length: 771aa MW: 86176.7 Da PI: 5.387 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 386.6 | 2.9e-118 | 397 | 767 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL+ cA+avs++d + a++lL+++++++s+ gd qRla+yf++ L+arla++++++y al+++++s s+ l+a+ evm.model.supercontig_81.126 397 LRTLLILCAQAVSANDSRTANELLKQIRQHSSSFGDGSQRLAHYFANSLEARLAGTGTQIYTALSSKRNS---SAVMLKAY 474 5789*********************************************************999999988...9******* PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 +++ ++P++k++ + aN++Il a+e+++++HiiDf+is+G+QWpaL++ L+ Rp+gpp+lRiTg++ p+sg ++ ++e evm.model.supercontig_81.126 475 QTYISICPFMKIAIIFANHTILSAAEKATALHIIDFGISYGFQWPALIHRLSMRPGGPPKLRITGIELPQSGfrPAKGVQE 555 ***********************************************************************9********* PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 tg+ L+k++e+++vpfe+++ + +++e++++++L+++p+E +aVn+ ++ +llde+v l+s+r++vL+l++++sP++++ evm.model.supercontig_81.126 556 TGRHLEKYCERFNVPFEYTA-IGQKWETIKINDLKLNPDEFVAVNCLFRFRNLLDETVVLDSPRNAVLNLIRKISPNIFIQ 635 ********************.7*********************************************************** PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + + ++n++ F++rf eal +ysalfd+ ++++pre+e r + E+e+ grei++v+aceg+ r+er et+++W+ r ++a evm.model.supercontig_81.126 636 AIVNGSYNTPFFVTRFKEALFHYSALFDMCDTNMPREDEMRLMFEKEFYGREIMSVLACEGTGRVERPETYKQWQVRNSRA 716 ********************************************************************************* PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 GF+++pl+ + + k+ ++ + ++v+e+sg++++gWk+r +++ SaW evm.model.supercontig_81.126 717 GFRQLPLDPELIRKFKCKVKDSFHNDFMVDEDSGWMLQGWKGRIVYASSAW 767 ********************998788************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.725 | 371 | 748 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-115 | 397 | 767 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 771 aa Download sequence Send to blast |
MDPQFNEYLN SMEGFTFENE SIFPNSDQSQ NLGNGFKLNN PTLDLQSIGL PPDPSFPNSD 60 SAWSRIIDGD SSSPSDDNDF SDTVLKYISQ VLMEEDMDEK PCMFHDALAL QAAEKSLYEV 120 IGEKYPPSPD QPPIYSNKTV DSPDDCCSSG FSDSSTNSHS SPSTSTSFDS HSSGNLVEHQ 180 LSWLQTPVPT NFVFQSTSNS GKKSSFNSAD NVFYHGNGLV RSSMSELLDK NLFNESDSML 240 QFQRGVEEAS KFLPKGNQLI IDLESYKPSA ESKDKAPNVV VKTEKHDTEL SPNQLIGKKS 300 HEREDEDLED GRSNKQSAVY GDESELSEMF DKVLLYGGGN EQPGACILDY SREQGALTTL 360 VQNESSKPLQ KNGLTNGSGG GKSRGKKLGK KKEVVDLRTL LILCAQAVSA NDSRTANELL 420 KQIRQHSSSF GDGSQRLAHY FANSLEARLA GTGTQIYTAL SSKRNSSAVM LKAYQTYISI 480 CPFMKIAIIF ANHTILSAAE KATALHIIDF GISYGFQWPA LIHRLSMRPG GPPKLRITGI 540 ELPQSGFRPA KGVQETGRHL EKYCERFNVP FEYTAIGQKW ETIKINDLKL NPDEFVAVNC 600 LFRFRNLLDE TVVLDSPRNA VLNLIRKISP NIFIQAIVNG SYNTPFFVTR FKEALFHYSA 660 LFDMCDTNMP REDEMRLMFE KEFYGREIMS VLACEGTGRV ERPETYKQWQ VRNSRAGFRQ 720 LPLDPELIRK FKCKVKDSFH NDFMVDEDSG WMLQGWKGRI VYASSAWVPA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-52 | 404 | 769 | 26 | 380 | Protein SCARECROW |
5b3h_A | 2e-52 | 404 | 769 | 25 | 379 | Protein SCARECROW |
5b3h_D | 2e-52 | 404 | 769 | 25 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_81.126 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894499.1 | 0.0 | scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2C9WLQ0 | 0.0 | A0A2C9WLQ0_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_81.126 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_81.126 |
Publications ? help Back to Top | |||
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