PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_81.124
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 770aa    MW: 86632.4 Da    PI: 6.4211
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_81.124genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.33.9e-1153967661373
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL++cA+av+++d + a++lL+++++++s  gd  qRla+yf++ L+arla+++ ++y+al+++++     +  l+a+
  evm.model.supercontig_81.124 396 LRTLLISCAQAVAANDSRTANELLKQIRQHSSFFGDGSQRLAHYFANSLEARLAGTGAQIYSALSSKRNL---AVVMLKAY 473
                                   6789*********************************************************999888876...99****** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   +++   +P++k++ + aN+  l a+e+++++HiiDf+is+G+QWpaL++ L+ Rp+gp++lRiTg++ p+sg   +e ++e
  evm.model.supercontig_81.124 474 QTYISSCPFMKIAIIFANHITLSAAEKATALHIIDFGISYGFQWPALIHRLSIRPGGPAKLRITGIELPQSGfrPAEGVQE 554
                                   ***********************************************************************9********* PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   tg+rL+k++e+++vpf++++ + +++e++++++L+++p+E +aVn+ ++  +llde+v ++s+r++vL+l++++sP+++++
  evm.model.supercontig_81.124 555 TGRRLEKYCERFNVPFQYTA-IGQKWETIKIDDLKLDPDEFVAVNCLFRFRNLLDETVVSNSPRNAVLNLIRKISPNIFIH 634
                                   ********************.7*********************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                      + ++n++ F++rf eal +ysalfd+ + ++pr+++ r + E+e+ grei+nv+aceg+ r+er et+++W+ r  +a
  evm.model.supercontig_81.124 635 GIVNGSYNTPFFVTRFKEALFHYSALFDMCDINMPRADQMRLMFEKEFYGREIMNVIACEGNGRVERPETYRQWQVRNLRA 715
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   GF+++pl+ +   + k++++  + + + v+e+sg++++gWk+r +++ SaW
  evm.model.supercontig_81.124 716 GFTKLPLDPELIRKFKCMVKDGYHNDFLVDEDSGWMLQGWKGRIVYASSAW 766
                                   *********************99888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.612370747IPR005202Transcription factor GRAS
PfamPF035141.4E-112396766IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MDHQFNEYLN SIEGFKFENE SIFPNSDQSQ NLGDGFKQNN PTLDLQFIGV PSDPRLPNSD  60
PSRSRIIEGD SSCHSDDNDF SETVLKYISQ VLMEEDMEEK PCMFHDALAL QAAEKSLYEV  120
IGEKYPPSPY QPPIYSNQTV DPDDCYSSGF SDSSTNSHSS PSTSTSFDSR STRNLVEHQL  180
SWLQTPFPTN FVFQSTANSG KKSSFNSADN VSYHGNGLVR SSVSKLLANN LFNQSHSVLQ  240
FQRGVEEASK FLPKGNQLIF DLESYKQAAE LKDKAPNVVV KTEKDDRKLS PNQLIGKKSH  300
KREDEDLEDG RGEKQSAVYV DESDLSEMFD KVLLFSGRNE QPGVCILDYS SEQGALKALV  360
QNESSKTLKK NGLRNGSDGG KSQVKKSGRN EEVVDLRTLL ISCAQAVAAN DSRTANELLK  420
QIRQHSSFFG DGSQRLAHYF ANSLEARLAG TGAQIYSALS SKRNLAVVML KAYQTYISSC  480
PFMKIAIIFA NHITLSAAEK ATALHIIDFG ISYGFQWPAL IHRLSIRPGG PAKLRITGIE  540
LPQSGFRPAE GVQETGRRLE KYCERFNVPF QYTAIGQKWE TIKIDDLKLD PDEFVAVNCL  600
FRFRNLLDET VVSNSPRNAV LNLIRKISPN IFIHGIVNGS YNTPFFVTRF KEALFHYSAL  660
FDMCDINMPR ADQMRLMFEK EFYGREIMNV IACEGNGRVE RPETYRQWQV RNLRAGFTKL  720
PLDPELIRKF KCMVKDGYHN DFLVDEDSGW MLQGWKGRIV YASSAWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-514007668374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_81.124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894490.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2C9WLQ00.0A0A2C9WLQ0_MANES; Uncharacterized protein
STRINGevm.model.supercontig_81.1240.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]