PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_81.122

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

GRAS

Protein Properties

Length: 691aa MW: 78123.4 Da PI: 6.3152

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_81.122	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	368.3	1e-112	311	660	2	353
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 +lL++cA++vss d++ a++lL+++++++s+ gd +qR+a+yf++AL+ r+a+ + +y+ + + +ts +e l+a++ evm.model.supercontig_81.122 311 STLLMQCAQCVSSFDQRTATELLKQIRQHSSQFGDGTQRMAFYFANALEVRMAGAKTPVYSPILSCKTS---AAEILQAYE 388 579*************************************************999999999666666...79*** PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleet 161 +++ ++P+ k+s++ aN++I++ +e+++r+HiiDf+i +G+QWp+L+q L+sRp+gpp+lRiTg++ p++g +e+++et evm.model.supercontig_81.122 389 VYVTACPFKKMSNFFANKTIVKLAEKATRLHIIDFGILYGFQWPCLIQRLSSRPNGPPNLRITGIELPQPGfrPAERVQET 469 ******************************************************************9****** PP GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 g+rL++++e+++vpfe+n+ +ak++e+++le+L+++++E+++Vn+ +++++++d+++ ++s rd+v+kl+k+++P+++v+ evm.model.supercontig_81.122 470 GHRLKRYCERFNVPFEYNF-IAKKWETIKLEDLKIDRDETTVVNCLYRMKNIPDDTMVVNSSRDTVMKLIKEINPDLFVHG 549 ***************.7******************************************************** PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 + +n++ F++rf eal ++s+lfd++ea++pre+++r++ Ere++gr+++nv+aceg+er+er et+++W+ r ++G evm.model.supercontig_81.122 550 VVNGTYNAPFFVTRFREALFHFSSLFDMFEATVPREDQQRMMFEREVFGRDAMNVIACEGTERVERPETYKQWQVRNLRMG 630 ***************************************************************************** PP GRAS 324 Fkpvplsekaakqaklllrkvksdgyrvee 353 F+++pl++++ k +k++++ + + ++ evm.model.supercontig_81.122 631 FRQLPLDHEILKRVKTMVKSSYHGDFVIDV 660 *****************99955587765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.557	284	661	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-110	311	660	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MDTVLHVYPS SLNGFKMDPS SMSSCSNQIL VNGDRPSQGI VDLDSSSPES NPQASSIESL 60 SPSSSTSLDG DHPDNSHFAH VVLKYINEML MEEDLEGQPC MLQDCLAVQA AEKSFYEVIG 120 QKYPPSPDRL SPQSLYQSDN HPDDNILGSS SSDSCDGYIA ASNSMESHWM HSEGKLEASH 180 LQASFTDSPQ NFTSLPDLEN CDCMPFAPKS NLLRPPELGK RYQSPSGSRG RKSYQRDDGG 240 YLEEGRSSKQ SALSLTELEQ SEMFDQVLLC KGENEQIVSG SLHEKLQSNQ RSKGKTRTKR 300 QGKKREVVDL STLLMQCAQC VSSFDQRTAT ELLKQIRQHS SQFGDGTQRM AFYFANALEV 360 RMAGAKTPVY SPILSCKTSA AEILQAYEVY VTACPFKKMS NFFANKTIVK LAEKATRLHI 420 IDFGILYGFQ WPCLIQRLSS RPNGPPNLRI TGIELPQPGF RPAERVQETG HRLKRYCERF 480 NVPFEYNFIA KKWETIKLED LKIDRDETTV VNCLYRMKNI PDDTMVVNSS RDTVMKLIKE 540 INPDLFVHGV VNGTYNAPFF VTRFREALFH FSSLFDMFEA TVPREDQQRM MFEREVFGRD 600 AMNVIACEGT ERVERPETYK QWQVRNLRMG FRQLPLDHEI LKRVKTMVKS SYHGDFVIDV 660 DGRGGLRALQ LSLVCFGCLQ ESLLLFRDEC *

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MDTVLHVYPS SLNGFKMDPS SMSSCSNQIL VNGDRPSQGI VDLDSSSPES NPQASSIESL  60
SPSSSTSLDG DHPDNSHFAH VVLKYINEML MEEDLEGQPC MLQDCLAVQA AEKSFYEVIG  120
QKYPPSPDRL SPQSLYQSDN HPDDNILGSS SSDSCDGYIA ASNSMESHWM HSEGKLEASH  180
LQASFTDSPQ NFTSLPDLEN CDCMPFAPKS NLLRPPELGK RYQSPSGSRG RKSYQRDDGG  240
YLEEGRSSKQ SALSLTELEQ SEMFDQVLLC KGENEQIVSG SLHEKLQSNQ RSKGKTRTKR  300
QGKKREVVDL STLLMQCAQC VSSFDQRTAT ELLKQIRQHS SQFGDGTQRM AFYFANALEV  360
RMAGAKTPVY SPILSCKTSA AEILQAYEVY VTACPFKKMS NFFANKTIVK LAEKATRLHI  420
IDFGILYGFQ WPCLIQRLSS RPNGPPNLRI TGIELPQPGF RPAERVQETG HRLKRYCERF  480
NVPFEYNFIA KKWETIKLED LKIDRDETTV VNCLYRMKNI PDDTMVVNSS RDTVMKLIKE  540
INPDLFVHGV VNGTYNAPFF VTRFREALFH FSSLFDMFEA TVPREDQQRM MFEREVFGRD  600
AMNVIACEGT ERVERPETYK QWQVRNLRMG FRQLPLDHEI LKRVKTMVKS SYHGDFVIDV  660
DGRGGLRALQ LSLVCFGCLQ ESLLLFRDEC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-46	314	638	8	330	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_81.122

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021894472.1	0.0	scarecrow-like protein 30
TrEMBL	A0A061GVV6	0.0	A0A061GVV6_THECC; GRAS family transcription factor, putative
STRING	evm.model.supercontig_81.122	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189
Representative plant	OGRP266	15	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-178	GRAS family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_81.122