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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_80.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
HD-ZIP |
| Protein Properties |
Length: 205aa MW: 23909.7 Da PI: 7.777 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_80.1 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58 | 1.6e-18 | 20 | 72 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ ++t+eq++ Le+ F n+++ e++ +LA++lgL+ r+V +W+qN+Ra++k
evm.model.supercontig_80.1 20 KKRLTHEQVRLLERSFCGNKKLEPEMKVQLASQLGLPPRRVAIWYQNKRARWK 72
4579************************************************9 PP
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| 2 | HD-ZIP_I/II | 107.1 | 1.3e-34 | 19 | 108 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
+k+rl++eqv+lLE+sF ++kLepe Kv+la++Lgl pr va+W+qn+RAR+kt+ lE+dy++L+ ++++ +e+++Le++v
evm.model.supercontig_80.1 19 NKKRLTHEQVRLLERSFCGNKKLEPEMKVQLASQLGLPPRRVAIWYQNKRARWKTQSLEVDYNTLQVKLENALAEKRQLERDV 101
79********************************************************************************* PP
HD-ZIP_I/II 85 eeLreel 91
+ L+ el
evm.model.supercontig_80.1 102 RLLQVEL 108
*999887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009646 | Biological Process | response to absence of light |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 205 aa
Download sequence Send
to blast |
MEYFHGTQQN PKQFGKLHNK KRLTHEQVRL LERSFCGNKK LEPEMKVQLA SQLGLPPRRV 60
AIWYQNKRAR WKTQSLEVDY NTLQVKLENA LAEKRQLERD VRLLQVELGK AQEMLFEFSH 120
HRQQQQQHQL MQSHHHHHHV YSNPDHHNNN GYTVMVNNCS TSNSCEDQGF SSSFHHDQDV 180
VSDEDLRLDE LYACLIGANG SSST*
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