PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_8.288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | FAR1 | ||||||||
Protein Properties | Length: 847aa MW: 96949.3 Da PI: 7.0518 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.1 | 1.1e-26 | 88 | 190 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkk 70 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +r+ +t+Cka+++vk+ evm.model.supercontig_8.288 88 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqnkqdPENTTGRRSCAKTDCKASMHVKR 169 5*******************************************9999999988876554555558999************* PP FAR1 71 ekdgkwevtkleleHnHelap 91 + dgkw+++++++eHnHel p evm.model.supercontig_8.288 170 KPDGKWVIHSFVKEHNHELLP 190 ******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-24 | 88 | 190 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.8E-27 | 288 | 380 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.815 | 568 | 604 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.6E-6 | 579 | 606 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MDIDLRLPSG EQCKEDEDAN GIDNMLDAEE KLHNGDLEGG KIVDVGADVH AENGGHLNSS 60 MADMVFKEDM NLEPLSGMEF ESHGEAYSFY QEYARSMGFN TAIQNSRRSK TSREFIDAKF 120 ACSRYGTKRE YDKSFNRPRA RQNKQDPENT TGRRSCAKTD CKASMHVKRK PDGKWVIHSF 180 VKEHNHELLP AQAVSEQTRK MYAAMARQFA EYKNVVGLKN DPKNPFDKGR NLALEGGDVE 240 IFLDFLTQMQ NLNSNFFYAM DLGEDQRLKN VFWVDAKSRH DYSNFCDVVS FDTAYIRNKY 300 KMPLALFVGV NQHYQFMLLG CALLSDETVA TVSWLMQIWL KAMGGQAPKV IITDQDKAMK 360 SVIPEVFPNA HHCFFLWHVL GKVSENLGHV IKQQENFMAK FEKCIYRSWT DEEFGRRWWK 420 ILDRFGLKED EWMQSLYEDR RKWAPAYMTN VFLAGMSTVQ RSESVNSSFD KYVHKKTTVQ 480 EFVKQYEAIL QDRYEEEAKA HSDTWNKQPT LKSPSPFEKS VSGVYTHAVF KKFQVEVLGA 540 VACHPKRESQ DGASFIFRVQ DFEKNQDFIV TWNEMKPEVS CICRLYEYKG YLCRHSMIVL 600 QICGLSAIPS QYILKRWTKD AKSRHFLGEE SEQVQTRLQR YNDLCQRAMK LSEEASLSQD 660 SYNIAFRALE EALENCVGVN TSNKSPTEAV ASPTHGLISI EEDNQSRSMS KTNKKKNPTK 720 KRKTNSEQEV MTVGAPDSIQ QMDKLSPRTV TLDGYYGAQQ SVPGMVQLNL MAPTRDSYYG 780 NQQTIQGLGQ LNSIAPSHDG YYSAQQSMHG LGQMDFFRTP AGFTYGIRED PNVRTAQLHE 840 EASRHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00078 | ChIP-seq | Transfer from AT3G22170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_8.288 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021907128.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_021907129.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_021907130.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_021907131.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_021907132.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A1S8ACW0 | 0.0 | A0A1S8ACW0_CITLI; Far-red elongated hypocotyls | ||||
STRING | evm.model.supercontig_8.288 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 | Representative plant | OGRP10576 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_8.288 |