PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_8.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 609aa    MW: 66950.1 Da    PI: 6.1464
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_8.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.59.5e-26117169254
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                                p+lrWt eLH+rF++av+qLGG+ kAtPk ++e+m+v gL l hvkSHLQ ++
  evm.model.supercontig_8.2 117 PQLRWTGELHDRFLNAVKQLGGPFKATPKGVMEMMDVSGLELCHVKSHLQEHK 169
                                89************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-11114169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-22116170IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-19116168IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MVRTNRNVEM IHAEMKDKGK GILVEERRDE VNHGDFRKLS HGRHLDQLDQ GDQNRLLFLQ  60
ETMAPAPQIS ITESDYLDFI LIDDIDDIDD EDSEEMGLDE EVDEDSSPMA VSAVNNPQLR  120
WTGELHDRFL NAVKQLGGPF KATPKGVMEM MDVSGLELCH VKSHLQEHKT GVCSSTIASL  180
TIVPFAIPNV SSVYHASAIP GVSPVPRAST IPSVSPIPRA FAITGGSPVP HASLIPRFGA  240
PLSPRPSAPL IPRHGSSQSP TATSCQRNLK LRAKRPYRPR QKGKGQEEWL LQTEAENYMM  300
RCQEAPRQYL NMALESTRQK LKSQLPQNHA VPTGNHGAQS FLSGPFPTVN AAIIYQNQQS  360
RSFSTCPLCS HGYASDSPYN TMVPVQPQLG ILDNHSAKNH GLQSSLYTAT RNNRIPKKNV  420
ASSFLVPEIF TMQARFADNH PDNYNFAPQN SVYAADENIV TPMENLARAC PVSIGFVENH  480
PGNRSFAPQH SVYATVRNIV APMENSASAR LLPVNFTNNH PGNYNFAPHN SVYTAAGNIV  540
TPMKNSTSVP LSEPVNLPAS AATDQEQEAQ AMEKDPLDIY LNWENIEMML NQGAPPDDLN  600
QFESGGNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-14118171457Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-14118171457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-14118171457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-14118171457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-14118171457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-14118171457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-14118171457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-14118171457Protein PHOSPHATE STARVATION RESPONSE 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_8.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_8.20.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.19e-20G2-like family protein