PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_8.103
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 560aa    MW: 60559.7 Da    PI: 7.2642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_8.103genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09364411455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  evm.model.supercontig_8.103 364 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 411
                                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-17358429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-10358415No hitNo description
Gene3DG3DSA:4.10.280.101.2E-16360428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6364411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDSEFFLNAG IPPQPQLPSL HFEPTPSSSS MPTWNSFSPP IDQLNSVDCF FNPAWEKSTD  60
HTLHFDSALS SLVSSPVASN SNVSTDSLLV RELIGKLGSI GKSGDISPHS QPLLGTTYIN  120
TPNSTNTSCY TTPLSSPPKL SLPMVKEKIP SLGKSMPLTS EFVADPGFAG RAARFSCFGS  180
RSFNGRTAQL GLNNRDFANR SNPIMANGKL SRVSSSPSLK AIGSQPGNKT TSPSQDRPEL  240
ANSQDESTIS EQIPNGDSPP KVPNDLNSRK RKAASSKGKS KEPVASPSPN ATKASEPNND  300
SNPKRSKQTE SNGNVDSPVK TEEEAQPNTG DQKQNKTNNN TTKPPEPPKD YIHVRARRGQ  360
ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML DEIINYVQSL QRQVEFLSMK  420
LASVNTRLDF SVDTLIAKDI IQSNNGLPHQ VFPIDSSAEA FFGHPPLQNP PLLQGNICNG  480
SVPPCPMDPS EPSLCRNLNI QLPSLDQFLP NLPQFPTFCE DDLQTLVQVG FGQNPIGGAD  540
INSENFHGSS KVSHMKIEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_8.103
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907334.10.0transcription factor bHLH62
TrEMBLA0A061DLW80.0A0A061DLW8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGevm.model.supercontig_8.1030.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-100bHLH family protein