PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_79.60
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 351aa    MW: 39762.4 Da    PI: 6.5104
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_79.60genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.6e-29125186159
                                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                  +dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+++e+tY+g H ++
  evm.model.supercontig_79.60 125 VDDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDKDPTIFEVTYRGVHACS 186
                                  59***************************98899*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27117186IPR003657WRKY domain
SuperFamilySSF1182902.75E-25124186IPR003657WRKY domain
SMARTSM007746.8E-39125187IPR003657WRKY domain
PfamPF031064.8E-26126185IPR003657WRKY domain
PROSITE profilePS5081121.884126183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAGEWSWEQK MLINELIQGM EQAKQLKVQL GTKSTAQTRQ VLVQNILSSY EKALSILKWG  60
GSITHPQTVE PESPLSINGS PGSDYFDVSL KDSQDTKGYS KKRKMLPKWT EHMRVSTETG  120
FEGPVDDGYS WRKYGQKDIL GAKYPRSYYR CTYRNTQNCW ATKQVQRSDK DPTIFEVTYR  180
GVHACSHGTQ LVQPPASPDK DEHKLHNHNH QQKESQEILL NLRQDLTIKT EGLNKNDMPP  240
SFSFPSTSFS CRNRENHNFS PPTFENNIVS CFFSPSFISP ATPESNYRSA LPFQMNNLGR  300
LHDVCSESDF TGLISANTSA SNSPILDVDF SLDPIELDPE FPFNTPEFFP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-18125185868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_79.60
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774415e-36GQ377441.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894802.10.0probable WRKY transcription factor 41
TrEMBLA0A1R3K7D11e-142A0A1R3K7D1_9ROSI; DNA-binding WRKY
STRINGevm.model.supercontig_79.600.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-77WRKY family protein