PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_79.43
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 311aa    MW: 34532 Da    PI: 9.3228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_79.43genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-19109159256
                          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  evm.model.supercontig_79.43 109 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAETAAYAYDRAAYKLRGE 159
                                  59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.83E-22108168No hitNo description
PROSITE profilePS5103223.064109166IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22109166IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-31109167IPR001471AP2/ERF domain
SMARTSM003804.8E-35109172IPR001471AP2/ERF domain
PRINTSPR003674.2E-10110121IPR001471AP2/ERF domain
PfamPF008473.8E-13110159IPR001471AP2/ERF domain
PRINTSPR003674.2E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQENTIPQFA FTNSGVDIRS SLSQIILAGG TNTLDSIFSH CSPSTTPTTT ISPGFEPLGS  60
SVYLWQRDLL QKFSQENRAM TCFARNPLTN PPQSSVSTSS YLCPMKKKLY RGVRQRHWGK  120
WVAEIRLPQN RMRVWLGTYD TAETAAYAYD RAAYKLRGEY ARLNFPNLKD PRKLGFVDST  180
RLTALKNSVD AKIQAICQRV RRERAKKNGK KSSGESGKNG SGDSEKKTVK KVESCSSSSS  240
LLAPVYEENW SSELMSPTVS ENGMWKNENS PPSVSTEGPM AVADEAEFEG CLLARMPSFD  300
PELIWEVLAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-20106166263ATERF1
3gcc_A7e-20106166263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_79.43
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894819.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W28e-77ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1L6CAU21e-127A0A1L6CAU2_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB391e-127A0A1L6CB39_VERFO; AP2/ERF domain-containing transcription factor
STRINGevm.model.supercontig_79.430.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.16e-61ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]