PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_77.61
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family DBB
Protein Properties Length: 303aa    MW: 32566.3 Da    PI: 4.7224
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_77.61genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.7e-06447542
                     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                  C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  evm.model.supercontig_77.61  4 QCNVCEAAEASVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47
                                 7******99*********************66899999999986 PP
2zf-B_box29.51.6e-095295138
                     zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                                 s++++C+ ++e    +fC +++ llC++C +++H+       H+
  evm.model.supercontig_77.61 52 SQMPRCDICQEMAGFFFCLQDRALLCRKCDVAIHSAnayvsaHQ 95
                                 689********98999******************6566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.68147IPR000315B-box-type zinc finger
CDDcd000211.90E-9347No hitNo description
SMARTSM003362.2E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578459.61E-54594No hitNo description
PROSITE profilePS501198.8735299IPR000315B-box-type zinc finger
SMARTSM003362.8E-135299IPR000315B-box-type zinc finger
PfamPF006431.0E-65395IPR000315B-box-type zinc finger
CDDcd000212.73E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKIQCNVCEA AEASVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLTSS SSQMPRCDIC  60
QEMAGFFFCL QDRALLCRKC DVAIHSANAY VSAHQRFLLT GVKVGPELTN PGASSSILKS  120
PSSERTSEKT SYSLSRRGTQ TILTGESNPV LPTNAGGVSD FATTEVSFAG GYAAGNIPPW  180
QMEEFLGLAD LSQTYGYLDN GSSKADSSKR GDSDSSPILR SAEEELDDDD DECLGQVPET  240
SWAVPQIPSP PTASGLYWPK NFRNYSNASP SWKLHSYIGS IGRALTGERQ TSAPDLEVFL  300
RD*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_77.61
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895033.10.0B-box zinc finger protein 22
SwissprotQ9SYM24e-96BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A061F8Y41e-142A0A061F8Y4_THECC; Light-regulated zinc finger protein 1, putative isoform 1
STRINGevm.model.supercontig_77.610.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-94light-regulated zinc finger protein 1