PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_77.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family YABBY
Protein Properties Length: 66aa    MW: 7426.69 Da    PI: 7.7384
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_77.16genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY58.23.7e-18763561
                        YABBY  5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61
                                 +  e++Cy+ C++C+ ++av vP +sl+ +vt+rC hC++l svn+a + q +++++
  evm.model.supercontig_77.16  7 FECERLCYMPCKHCKIVVAVRVPCSSLYDIVTIRCVHCSNLWSVNMAATLQSMSTQD 63
                                 5689*******************************************9999988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-18962IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MSSSNGFECE RLCYMPCKHC KIVVAVRVPC SSLYDIVTIR CVHCSNLWSV NMAATLQSMS  60
TQDLHQ
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_77.16
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895056.11e-42axial regulator YABBY 5-like isoform X1
SwissprotQ8GW461e-22YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A2G5DFY83e-22A0A2G5DFY8_AQUCA; Uncharacterized protein
STRINGevm.model.supercontig_77.163e-42(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55382649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-25YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]