 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_75.57 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
C3H |
| Protein Properties |
Length: 241aa MW: 27029.1 Da PI: 7.7289 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_75.57 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 28.5 | 2.7e-09 | 37 | 61 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+ C f++ G C+ G++C+FaHg
evm.model.supercontig_75.57 37 FKTRVCAKFRA-GNCRNGENCNFAHG 61
69*********.*************9 PP
|
| 2 | zf-CCCH | 27.9 | 4.2e-09 | 99 | 121 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
++lC+ f+ + +C+yG+rC+F H
evm.model.supercontig_75.57 99 MKLCKKFYNGEECPYGERCNFLH 121
689******66************ PP
|
| 3 | zf-CCCH | 35 | 2.4e-11 | 177 | 203 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC + t +C++ d+C+FaHg+
evm.model.supercontig_75.57 177 WKTKLCTKWETTSHCPFSDKCHFAHGQ 203
8************************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 9.8E-15 | 34 | 69 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.32E-8 | 35 | 67 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.159 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.6E-6 | 36 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.4E-7 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.27E-7 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.003 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.873 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-6 | 99 | 121 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-8 | 99 | 122 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-15 | 172 | 207 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.89E-10 | 172 | 208 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.7E-4 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.404 | 176 | 204 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-8 | 177 | 203 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MSHVNDEDNQ SSSSPYQSNS RTPINPPVNK GTSNIFFKTR VCAKFRAGNC RNGENCNFAH 60
GVEDLRQPPP NWQELVGARG DEERSSGNWE DDQRIIHRMK LCKKFYNGEE CPYGERCNFL 120
HEDPAKFRDD NRFRESSAIS IGTTPPPVVH GSGGTQSEVN RSANNNNMMM MMKPVYWKTK 180
LCTKWETTSH CPFSDKCHFA HGQAELQMFV GRVEGDGGNT TSTVAKPNIV AANDASMMKT 240
V
|
