PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

ERF

Protein Properties

Length: 214aa MW: 23524.3 Da PI: 4.9241

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_74.86	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.5	2.1e-15	60	107	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +Wv+eIr+p++ ++r++lg++ ++e+Aa+a++ a+++l+g evm.model.supercontig_74.86 60 YRGIRRRS--DKWVSEIREPRK---TTRIWLGTYPSPEMAAAAYDVAALALKG 107 9*9765..7****843...5*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.4E-25	59	116	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-26	59	121	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.297	59	115	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.02E-18	59	116	IPR016177	DNA-binding domain
Pfam	PF00847	1.7E-9	60	107	IPR001471	AP2/ERF domain
CDD	cd00018	9.42E-16	60	117	No hit	No description
PRINTS	PR00367	2.7E-6	60	71	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-6	97	117	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MADDHDPKIL PSNVSQLDQP DHHDPHSQTA LPNIPTCEIP DPSKFTNMAS SSSTRKHPMY 60 RGIRRRSDKW VSEIREPRKT TRIWLGTYPS PEMAAAAYDV AALALKGGDA VLNFPALVGT 120 YPVPKSTSPA DIRDAATAAA ALKKPPTAGD DPAPDHHQYK GEFIDEEELL NMPNLLVDMA 180 EGMMVSPPRI SFPPSDDSQE NFDHGESLWS YFY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00558	DAP	Transfer from AT5G52020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_74.86

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX532988	0.0	JX532988.1 Carica papaya ethylene-responsive transcription factor 1 (ERF1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021895320.1	1e-157	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	4e-51	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	T1QCH2	1e-154	T1QCH2_CARPA; Ethylene-responsive transcription factor 1
STRING	evm.model.supercontig_74.86	1e-156	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1957	27	77
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	1e-46	ERF family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_74.86

Publications ? help Back to Top
Li X, et al. Isolation and characterization of ethylene response factor family genes during development, ethylene regulation and stress treatments in papaya fruit. Plant Physiol. Biochem., 2013. 70: p. 81-92 [PMID:23770597] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]