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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | E2F/DP | ||||||||
Protein Properties | Length: 157aa MW: 17720.2 Da PI: 5.0597 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 61.4 | 1.3e-19 | 17 | 75 | 28 | 71 |
E2F_TDP 28 nevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 + va+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg evm.model.supercontig_738.1 17 SYVADELVAEfadpgssgtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 75 679***********************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 5.8E-13 | 2 | 75 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.2E-16 | 15 | 75 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-14 | 15 | 76 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.0E-29 | 17 | 81 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01138 | 4.5E-8 | 82 | 157 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 6.8E-20 | 82 | 146 | No hit | No description |
Pfam | PF08781 | 2.7E-18 | 83 | 144 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MRKLIVRPTQ ATGSEASYVA DELVAEFADP GSSGTSPDQQ QYDEKNIRRR VYDALNVLMA 60 MDIISKDKKE IQWKGLPRTS LSDIEELKAE RLGLRNKIEK KAAYLQELED QYIGLQNLIQ 120 RNEQLYSSEN APSGGVALPF ILVQLRTLFG GLLAYKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-20 | 19 | 80 | 34 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_738.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021901808.1 | 1e-86 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 5e-76 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A2I4ECM3 | 8e-79 | A0A2I4ECM3_JUGRE; transcription factor-like protein DPB isoform X2 | ||||
STRING | evm.model.supercontig_738.1 | 1e-110 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6139 | 26 | 41 | Representative plant | OGRP2511 | 17 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 2e-78 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_738.1 |