PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_738.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family E2F/DP
Protein Properties Length: 157aa    MW: 17720.2 Da    PI: 5.0597
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_738.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP61.41.3e-1917752871
                      E2F_TDP 28 nevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                                 + va+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  evm.model.supercontig_738.1 17 SYVADELVAEfadpgssgtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 75
                                 679***********************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013725.8E-13275IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-161575IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-141576IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.0E-291781IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011384.5E-882157IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.8E-2082146No hitNo description
PfamPF087812.7E-1883144IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MRKLIVRPTQ ATGSEASYVA DELVAEFADP GSSGTSPDQQ QYDEKNIRRR VYDALNVLMA  60
MDIISKDKKE IQWKGLPRTS LSDIEELKAE RLGLRNKIEK KAAYLQELED QYIGLQNLIQ  120
RNEQLYSSEN APSGGVALPF ILVQLRTLFG GLLAYKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-2019803493PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901808.11e-86transcription factor-like protein DPB
SwissprotQ9FNY25e-76DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2I4ECM38e-79A0A2I4ECM3_JUGRE; transcription factor-like protein DPB isoform X2
STRINGevm.model.supercontig_738.11e-110(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-78Transcription factor DP