PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_70.47
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 289aa    MW: 31966.6 Da    PI: 4.9592
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_70.47genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-192371355
                          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                 + GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  evm.model.supercontig_70.47 23 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 71
                                 56******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-302278No hitNo description
PROSITE profilePS5103220.8112279IPR001471AP2/ERF domain
SMARTSM003803.7E-342285IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-212380IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-292379IPR001471AP2/ERF domain
PRINTSPR003673.7E-82334IPR001471AP2/ERF domain
PfamPF008476.2E-122571IPR001471AP2/ERF domain
PRINTSPR003673.7E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MNASTSSRSK KKQPQQEATG GRFLGVRRRP WGRYAAEIRD PTTKERHWLG TFDTAEEAAL  60
AYDRAARSMR GPRARTNFVY SDMPPGSSVT SIISPDDVQT NQHNKNNFQT SFLLDPPPHQ  120
QQDIPHLVSS VNVSDHHSYN YFSAMTTSGE DDIWGSSGSG SGSGSGSYAH HYHQLQQQQQ  180
QQQQPEQGLN VNGVSSNNDH ELPPLPSCEM SGCEYWGYNN QEYEGGGSEG MVTGLTEQTT  240
GLEMMDSAGS YFDFDSSQYV HSPLFSRMPT VYDTPADPFD LGTSSYFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-201878162ATERF1
3gcc_A5e-201878162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_70.47
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895667.10.0ethylene-responsive transcription factor LEP
TrEMBLA0A1Q3C4095e-75A0A1Q3C409_CEPFO; AP2 domain-containing protein
STRINGevm.model.supercontig_70.470.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-39ERF family protein