PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_70.116
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 698aa    MW: 76111.9 Da    PI: 5.7804
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_70.116genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.85.9e-1293166961374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn...... 73 
                                   lv+lLl cAeav+++d   a+++L +l+  +sp gd+mqR+a++fteAL+arla   +++ ++++ +  + ++++      
  evm.model.supercontig_70.116 316 LVHLLLYCAEAVAKEDYMSARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAAtlTTKPTAATTTIATHTSSSsssstp 396
                                   68****************************************************943222233222222222222334545 PP

                          GRAS  74 ..........sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRi 144
                                             s+e l+++++ ++++P++kf+h+t NqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+  lRi
  evm.model.supercontig_70.116 397 kslssyfppnSVEILKIYQIVYQACPYIKFAHFTSNQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGALFLRI 477
                                   55555555555555555599************************************************************* PP

                          GRAS 145 TgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                                   Tgvg       e+++etg+ La++A++l++pfef++ + + le++++++++ + gEalaVn v +lhr++    +l     
  evm.model.supercontig_70.116 478 TGVGY----PIESVRETGRCLAELAQSLHIPFEFHP-IGEPLEEIKPHMFNRRVGEALAVNAVNRLHRVP--GNCLG---- 547
                                   *****....99*************************.7*******************************9..44444.... PP

                          GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                                   ++L ++++  P++v+vve+ea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+vacegaer+
  evm.model.supercontig_70.116 548 NLLAMIRDQAPNIVTVVEKEANHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGAERI 628
                                   5******************************************************************************** PP

                          GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                    rhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  evm.model.supercontig_70.116 629 DRHERLEKWRKIMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWR 696
                                   *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.734290676IPR005202Transcription factor GRAS
PfamPF035142.0E-126316696IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MINSLCGSLG SIKSEGSCIK LQNPSSPNDD VLSDQSTTNK KPAALSSDHL DHQQTSSLTP  60
PCLNFPSLKF DLDGDVEPEN SFWETFLSEH LDSDFMILSP VRNLPPPASP QASTYNFNYV  120
HAMQGQSLSG CSPPRFSSQV GALTSQRPSG KAAGMSSPLQ KVFNSPNNQF MQIESLSLPA  180
IGEFLDDYNH YSTTGMATTS DKLYEMPDME AAGAVDGING TGDMGSSRFC GLVGTKTTEQ  240
GGLCSSSSMA GAQEGEIYQA GPSSNGPPFM TQQQQQVGQQ IRPPPPPAEQ HQSLNHSSVM  300
PLPIGSDQEQ DSGLQLVHLL LYCAEAVAKE DYMSARRYLH HLNRVVSPLG DSMQRVASCF  360
TEALSARLAA TLTTKPTAAT TTIATHTSSS SSSSTPKSLS SYFPPNSVEI LKIYQIVYQA  420
CPYIKFAHFT SNQAIFEAFE AEERVHVIDL DILQGYQWPA FMQALAARPG GALFLRITGV  480
GYPIESVRET GRCLAELAQS LHIPFEFHPI GEPLEEIKPH MFNRRVGEAL AVNAVNRLHR  540
VPGNCLGNLL AMIRDQAPNI VTVVEKEANH NGPYFLGRFL EALHYYSAIF DSLDATFPPD  600
SAQRAKVEQY IFAPEIRNIV ACEGAERIDR HERLEKWRKI MEGKGFKGVP LSANAVTQSK  660
ILLGLYSCDG YRLTEDKGCL LLGWQDRAIL AASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-9232369525377Protein SCARECROW
5b3h_D6e-9232369525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_70.116
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895683.10.0scarecrow-like protein 23
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLB9RH370.0B9RH37_RICCO; DELLA protein GAI1, putative
STRINGevm.model.supercontig_70.1160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165101013
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-91RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]