PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.72
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 305aa    MW: 33670.8 Da    PI: 8.4408
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.72genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.21.6e-1636126186
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                                 +W+++ + +L+ea  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk +k++  + + + +s+
  evm.model.supercontig_7.72  36 CWSEEATATLVEAWGRRYVELNRGNLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGTLTSS 118
                                 7****************************************99999***************************999888899* PP

                    trihelix  79 cpyfdqle 86 
                                 +p++++++
  evm.model.supercontig_7.72 119 WPFYERMD 126
                                 ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2634126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MADQTDSLPP SVSTNPTATA TVATPPSRPL PVREDCWSEE ATATLVEAWG RRYVELNRGN  60
LRQKDWQEVA DAVNALHGHT KKTHRTDVQC KNRIDTIKKK YKIEKARVTS SNGTLTSSWP  120
FYERMDCLIG SNVTQKKPSP SPKFSPTASH QPTPPPPPAR FSPPVALPLP YKKAGTPTAV  180
AALPQKRGAP DDGYFRRNYS AIAAAAAAAE SDEEEEDGEG MGEDGEGGSE GEEGGLRRLA  240
RAIERFGEVY ERVEGEKLRQ MVDLEKQRMQ FAKDLEVQRM RMFMDTQVQL ERIKRGKRSG  300
SSGE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_7.72
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907674.10.0trihelix transcription factor ASIL2-like isoform X1
TrEMBLA0A061GDM31e-135A0A061GDM3_THECC; Sequence-specific DNA binding transcription factors isoform 1
TrEMBLA0A061GEJ11e-135A0A061GEJ1_THECC; Sequence-specific DNA binding transcription factors isoform 2
STRINGevm.model.supercontig_7.720.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-41sequence-specific DNA binding transcription factors