 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_7.72 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
Trihelix |
| Protein Properties |
Length: 305aa MW: 33670.8 Da PI: 8.4408 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_7.72 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 52.2 | 1.6e-16 | 36 | 126 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessst 78
+W+++ + +L+ea ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ ++k+yk +k++ + + + +s+
evm.model.supercontig_7.72 36 CWSEEATATLVEAWGRRYVELNRGNLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGTLTSS 118
7****************************************99999***************************999888899* PP
trihelix 79 cpyfdqle 86
+p++++++
evm.model.supercontig_7.72 119 WPFYERMD 126
******97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MADQTDSLPP SVSTNPTATA TVATPPSRPL PVREDCWSEE ATATLVEAWG RRYVELNRGN 60
LRQKDWQEVA DAVNALHGHT KKTHRTDVQC KNRIDTIKKK YKIEKARVTS SNGTLTSSWP 120
FYERMDCLIG SNVTQKKPSP SPKFSPTASH QPTPPPPPAR FSPPVALPLP YKKAGTPTAV 180
AALPQKRGAP DDGYFRRNYS AIAAAAAAAE SDEEEEDGEG MGEDGEGGSE GEEGGLRRLA 240
RAIERFGEVY ERVEGEKLRQ MVDLEKQRMQ FAKDLEVQRM RMFMDTQVQL ERIKRGKRSG 300
SSGE*
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G58630.1 | 3e-41 | sequence-specific DNA binding transcription factors |
