PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

ERF

Protein Properties

Length: 190aa MW: 20970.3 Da PI: 6.683

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_7.269	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	9.2e-19	37	87	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g evm.model.supercontig_7.269 37 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 87 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.5E-13	37	87	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.3E-22	38	96	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.6E-32	38	96	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-35	38	101	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.13	38	95	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-10	39	50	IPR001471	AP2/ERF domain
CDD	cd00018	3.52E-33	39	97	No hit	No description
PRINTS	PR00367	1.5E-10	61	77	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSFPHHNLPS ETDTATSNSS SPQPKKTKRM RDSSKHPVYR GVRMRNWGKW VSEIREPRKK 60 SRIWLGTFST PEMAARAHDV AALSIKGNSA ILNFPDLASS LPRPVSLAPR DVQAAAAKAA 120 QMDNFHSPTP TTLSSSTSLS SLVSAMDITE PDELSEIVEL PSLGANYEEF VLFESPWLED 180 CGYIGSDYQX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-19	33	95	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_7.269

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907680.1	1e-138	dehydration-responsive element-binding protein 3
Swissprot	Q9LYD3	3e-66	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A061GK29	2e-69	A0A061GK29_THECC; Integrase-type DNA-binding superfamily protein
STRING	evm.model.supercontig_7.269	1e-137	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-63	ERF family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_7.269

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]