PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.253
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family CPP
Protein Properties Length: 485aa    MW: 53341.6 Da    PI: 6.9148
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.253genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR24.45.7e-0812371642
                          TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                                 +YCeCfaag +C+  C+C +C+N+ e+
  evm.model.supercontig_7.253 12 RYCECFAAGIYCDG-CNCLNCHNNVEN 37
                                 6*************.********9875 PP
2TCR506e-1682121140
                          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC +CkN e
  evm.model.supercontig_7.253  82 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCLECKNFE 121
                                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163430.851122IPR005172CRC domain
SMARTSM011140.00311237IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-51234IPR005172CRC domain
SMARTSM011142.6E-1882123IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-1285120IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MSIHEQNIAI FRYCECFAAG IYCDGCNCLN CHNNVENEDA RQDAVGATLG RNPNAFRPKI  60
ASSPCGSHNA KEDLEEVQMV GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCLECKNF  120
EGSEERRGVL HGNPNTIAYV QQAANAAITG AIGLSGYVAS TATKKRKIEE LLFSLAAKEP  180
SIQMAAKCQQ ENPLCNHSVS SLLSVPVSQT VNRAVLGSSK SPYRSPLADI LQLQDIQKLC  240
SDMIIISLGA TLTHEENRKE MDRHVETDYY SVQTSIFSSV EARETSKKIK DTLEGVGDVR  300
LTENQVDRDS IINCSAIRDD FQNERPVSPG TRALMCDEKD SILMASLATR MAGHCIKTNQ  360
TSLKEYEHSE AYAEQERLVL TRFRDFLNRL ITCGSIKETM CSPMTRSETA KAGTKIENQK  420
QTYCNGNLKP SFPMLVEKAE TETAPISSSS DGLTLKVGFS VGKGELCWVH LTLFTQHLIA  480
ALSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-24613118132Protein lin-54 homolog
5fd3_B1e-24613118132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_7.253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150353e-38AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907759.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-118TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A061GJZ21e-164A0A061GJZ2_THECC; Transcription factor, putative isoform 1
STRINGevm.model.supercontig_7.2530.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-117Tesmin/TSO1-like CXC domain-containing protein